Pre_GI: BLASTN Hits

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Query: NC_011083:1173802 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,

Start: 1173802, End: 1196552, Length: 22751

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a multidrug resistant strain. Salmonella enterica subsp. enterica serovar Heidelberg is one of the more common serovars causing disease in the USA. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003197:1170746*1170746119097320228Salmonella typhimurium LT2, complete genome038980BLASTN svgBLASTP svg
NC_006511:1808815*1808815183245923645Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC037900BLASTN svgBLASTP svg
NC_010102:2020762*2020762204160320842Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,034520BLASTN svgBLASTP svg
NC_011080:11669511166951119330926359Salmonella enterica subsp. enterica serovar Newport str. SL254,029650BLASTN svgBLASTP svg
NC_011149:1035990*1035990106096324974Salmonella enterica subsp. enterica serovar Agona str. SL483,025260BLASTN svgBLASTP svg
NC_004631:1881214*1881214190534324130Salmonella enterica subsp. enterica serovar Typhi Ty2, complete021310BLASTN svgBLASTP svg
NC_003198:1078113*1078113110191423802Salmonella enterica subsp. enterica serovar Typhi str. CT18,021300BLASTN svgBLASTP svg
NC_010067:1829041*1829041185794928909Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete08427BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome01285BLASTN svgBLASTP svg
NC_013716:1138441*1138441116841529975Citrobacter rodentium ICC168, complete genome01267BLASTN svgBLASTP svg
NC_020181:2097066*2097066212464227577Enterobacter aerogenes EA1509E, complete genome4e-150539BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome5e-125456BLASTN svgBLASTP svg
NC_003197:33208633208635504122956Salmonella typhimurium LT2, complete genome2e-112414BLASTN svgBLASTP svg
NC_006511:25405002540500256809927600Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-112414BLASTN svgBLASTP svg
NC_003198:3881221*3881221390454423324Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-109404BLASTN svgBLASTP svg
NC_010102:16165301616530165555739028Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-103385BLASTN svgBLASTP svg
NC_003197:1471349*1471349150894537597Salmonella typhimurium LT2, complete genome4e-101377BLASTN svgBLASTP svg
NC_011149:17106011710601173914728547Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-100375BLASTN svgBLASTP svg
NC_011080:14707941470794150838537592Salmonella enterica subsp. enterica serovar Newport str. SL254,8e-96359BLASTN svgBLASTP svg
NC_011083:14768941476894150250725614Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,5e-94353BLASTN svgBLASTP svg
NC_006511:1506915*1506915154594239028Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-91345BLASTN svgBLASTP svg
NC_011149:1870931*1870931190072529795Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-72281BLASTN svgBLASTP svg
NC_010102:17797071779707181158331877Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-53218BLASTN svgBLASTP svg
NC_006511:1654959*1654959167339918441Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-46194BLASTN svgBLASTP svg
NC_004631:1182883*1182883121459931717Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-44186BLASTN svgBLASTP svg
NC_003198:1771432*1771432180593534504Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-44186BLASTN svgBLASTP svg
NC_011080:33312133312135949426374Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-41178BLASTN svgBLASTP svg
NC_011149:30955630955633763728082Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-41178BLASTN svgBLASTP svg
NC_015968:16188621618862164127522414Enterobacter asburiae LF7a chromosome, complete genome3e-40174BLASTN svgBLASTP svg
NC_004631:26159082615908263824422337Salmonella enterica subsp. enterica serovar Typhi Ty2, complete4e-39170BLASTN svgBLASTP svg
NC_006511:42254554225455425318227728Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-38167BLASTN svgBLASTP svg
NC_011149:46774124677412471244835037Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-37165BLASTN svgBLASTP svg
NC_010102:27623042762304278909926796Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-35159BLASTN svgBLASTP svg
NC_011083:33891033891036299924090Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-35159BLASTN svgBLASTP svg
NC_011080:47032664703266472876525500Salmonella enterica subsp. enterica serovar Newport str. SL254,6e-35157BLASTN svgBLASTP svg
NC_010102:4745949*4745949476837922431Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,6e-35157BLASTN svgBLASTP svg
NC_006511:1579776*1579776160172721952Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-35157BLASTN svgBLASTP svg
NC_004631:13258171325817135139825582Salmonella enterica subsp. enterica serovar Typhi Ty2, complete9e-34153BLASTN svgBLASTP svg
NC_003198:1621347*1621347164626724921Salmonella enterica subsp. enterica serovar Typhi str. CT18,9e-34153BLASTN svgBLASTP svg
NC_014722:193500*19350021504421545Burkholderia rhizoxinica HKI 454, complete genome4e-33151BLASTN svgBLASTP svg
NC_006905:4638707*4638707467273934033Salmonella enterica subsp. enterica serovar Choleraesuis str4e-30141BLASTN svgBLASTP svg
NC_010102:17031721703172172512221951Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-29139BLASTN svgBLASTP svg
NC_007947:1556437*1556437158119324757Methylobacillus flagellatus KT, complete genome1e-29139BLASTN svgBLASTP svg
NC_006905:15090931509093153636427272Salmonella enterica subsp. enterica serovar Choleraesuis str6e-29137BLASTN svgBLASTP svg
NC_013421:30939953093995311483420840Pectobacterium wasabiae WPP163, complete genome8e-25123BLASTN svgBLASTP svg
NC_012962:10415181041518106637824861Photorhabdus asymbiotica, complete genome8e-25123BLASTN svgBLASTP svg
NC_012880:31252613125261315478529525Dickeya dadantii Ech703, complete genome8e-25123BLASTN svgBLASTP svg
NC_012912:84433984433986800523667Dickeya zeae Ech1591, complete genome8e-22113BLASTN svgBLASTP svg
NC_007712:1712667*1712667173153718871Sodalis glossinidius str. 'morsitans', complete genome3e-21111BLASTN svgBLASTP svg
NC_005126:274000*27400029651122512Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-20107BLASTN svgBLASTP svg
NC_005126:5188976*5188976521454825573Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-19105BLASTN svgBLASTP svg
NC_011149:3863913*3863913388509921187Salmonella enterica subsp. enterica serovar Agona str. SL483,5e-1797.6BLASTN svgBLASTP svg
NC_003197:27207262720726274079420069Salmonella typhimurium LT2, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010067:2304313*2304313233059926287Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-1695.6BLASTN svgBLASTP svg
NC_011080:27224922722492274217119680Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-1695.6BLASTN svgBLASTP svg
NC_010645:13414751341475136854027066Bordetella avium 197N, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015224:44261674426167445165025484Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-1487.7BLASTN svgBLASTP svg
NC_012779:25861752586175261323427060Edwardsiella ictaluri 93-146, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_012779:2424967*2424967244959924633Edwardsiella ictaluri 93-146, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_012779:1449500*1449500150683157332Edwardsiella ictaluri 93-146, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_003143:16300001630000167609946100Yersinia pestis CO92, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_006155:17560001756000179467638677Yersinia pseudotuberculosis IP 32953, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008149:28023922802392285367651285Yersinia pestis Nepal516, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008150:84472784472789009945373Yersinia pestis Antiqua, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010634:17555481755548179542439877Yersinia pseudotuberculosis PB1/+, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012779:95755895755898306025503Edwardsiella ictaluri 93-146, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012912:24270924270927148728779Dickeya zeae Ech1591, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012779:26198712619871264372223852Edwardsiella ictaluri 93-146, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_012880:15852551585255161262427370Dickeya dadantii Ech703, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010658:1772994*1772994179509922106Shigella boydii CDC 3083-94, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010170:1661915*1661915168523723323Bordetella petrii, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007613:1353500*1353500137891925420Shigella boydii Sb227, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_006155:3805640*3805640384073735098Yersinia pseudotuberculosis IP 32953, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_005810:39172543917254395265235399Yersinia pestis biovar Microtus str. 91001, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_004088:3689000*3689000372277733778Yersinia pestis KIM, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_003197:21529942152994218696633973Salmonella typhimurium LT2, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_003143:1059580*1059580109467535096Yersinia pestis CO92, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008027:71350071350073434320844Pseudomonas entomophila L48, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008149:3556999*3556999359064933651Yersinia pestis Nepal516, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008150:31790331790335159933697Yersinia pestis Antiqua, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010159:17246917246919591323445Yersinia pestis Angola, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010634:3720214*3720214375380933596Yersinia pseudotuberculosis PB1/+, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_011149:21108612110861214483233972Salmonella enterica subsp. enterica serovar Agona str. SL483,7e-1073.8BLASTN svgBLASTP svg
NC_012779:33168773316877333727020394Edwardsiella ictaluri 93-146, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013508:31889783188978324937660399Edwardsiella tarda EIB202, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_003902:1858349*1858349191581657468Xanthomonas campestris pv. campestris str. ATCC 33913, complete3e-0971.9BLASTN svgBLASTP svg
NC_005956:1019788*1019788103773717950Bartonella henselae str. Houston-1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012779:3176820*3176820323178054961Edwardsiella ictaluri 93-146, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012846:1147000*1147000116490817909Bartonella grahamii as4aup, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_016010:1822212*1822212190411881907Xanthomonas axonopodis pv. citrumelo F1 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_014923:3968000*3968000399264624647Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_002678:34199634199636093318938Mesorhizobium loti MAFF303099, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011386:2073726*2073726211598742262Oligotropha carboxidovorans OM5, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013508:2356865*2356865238859931735Edwardsiella tarda EIB202, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015684:2033985*2033985205409920115Oligotropha carboxidovorans OM5 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_020063:2565605*2565605259927233668Enterobacteriaceae bacterium strain FGI 57, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004129:43333024333302435159918298Pseudomonas fluorescens Pf-5, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009138:2110500*2110500213274722248Herminiimonas arsenicoxydans, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010002:40385004038500406476326264Delftia acidovorans SPH-1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013592:14245601424560145021625657Dickeya dadantii Ech586, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014532:1873169*1873169189841425246Halomonas elongata DSM 2581, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012912:47377034737703476071123009Dickeya zeae Ech1591, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012489:1797032*1797032181538418353Gemmatimonas aurantiaca T-27, complete genome3e-0661.9BLASTN svgBLASTP svg