Pre_GI: BLASTN Hits

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Query: NC_011080:610428 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 610428, End: 631599, Length: 21172

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011083:654479*65447967531220834Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,018470BLASTN svgBLASTP svg
NC_003197:60604860604862559319546Salmonella typhimurium LT2, complete genome015960BLASTN svgBLASTP svg
NC_006905:65173265173267724625515Salmonella enterica subsp. enterica serovar Choleraesuis str014860BLASTN svgBLASTP svg
NC_011149:58889558889560977120877Salmonella enterica subsp. enterica serovar Agona str. SL483,014530BLASTN svgBLASTP svg
NC_003198:598000*59800061851020511Salmonella enterica subsp. enterica serovar Typhi str. CT18,014450BLASTN svgBLASTP svg
NC_010102:24954412495441251396918529Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,014160BLASTN svgBLASTP svg
NC_004631:23663352366335238728320949Salmonella enterica subsp. enterica serovar Typhi Ty2, complete013960BLASTN svgBLASTP svg
NC_006511:2251022*2251022227421723196Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC013920BLASTN svgBLASTP svg
NC_006511:24677632467763249158023818Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC01691BLASTN svgBLASTP svg
NC_011083:40302240302245026847247Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,01544BLASTN svgBLASTP svg
NC_020063:33525163352516337629223777Enterobacteriaceae bacterium strain FGI 57, complete genome0684BLASTN svgBLASTP svg
NC_006511:529424*52942455225122828Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC0674BLASTN svgBLASTP svg
NC_004631:53125453125455515123898Salmonella enterica subsp. enterica serovar Typhi Ty2, complete0674BLASTN svgBLASTP svg
NC_003198:2453074*2453074247785124778Salmonella enterica subsp. enterica serovar Typhi str. CT18,0674BLASTN svgBLASTP svg
NC_006905:40115440115443134930196Salmonella enterica subsp. enterica serovar Choleraesuis str8e-133482BLASTN svgBLASTP svg
NC_010067:2304313*2304313233059926287Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-98367BLASTN svgBLASTP svg
AC_000091:24624612462461248878526325Escherichia coli W3110 DNA, complete genome4e-76293BLASTN svgBLASTP svg
NC_000913:2455037*2455037248136126325Escherichia coli K12, complete genome4e-76293BLASTN svgBLASTP svg
NC_010473:2548946*2548946258173732792Escherichia coli str. K-12 substr. DH10B, complete genome4e-76293BLASTN svgBLASTP svg
NC_011740:62140862140864031618909Escherichia fergusonii ATCC 35469, complete genome4e-76293BLASTN svgBLASTP svg
NC_014121:32359113235911326030624396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete5e-69270BLASTN svgBLASTP svg
NC_008258:26980626980629518525380Shigella flexneri 5 str. 8401, complete genome5e-69270BLASTN svgBLASTP svg
NC_004741:310382*31038233778027399Shigella flexneri 2a str. 2457T, complete genome5e-69270BLASTN svgBLASTP svg
NC_004337:309833*30983333864628814Shigella flexneri 2a str. 301, complete genome5e-69270BLASTN svgBLASTP svg
NC_012214:13555001355500137677021271Erwinia pyrifoliae Ep1/96, complete genome2e-50208BLASTN svgBLASTP svg
NC_009792:17399701739970176500625037Citrobacter koseri ATCC BAA-895, complete genome2e-41178BLASTN svgBLASTP svg
NC_010694:12508411250841127452923689Erwinia tasmaniensis, complete genome3e-33151BLASTN svgBLASTP svg
NC_020260:2725201*2725201275882333623Cronobacter sakazakii Sp291, complete genome1e-32149BLASTN svgBLASTP svg
NC_013282:12009931200993124927948287Cronobacter turicensis, complete genome1e-32149BLASTN svgBLASTP svg
NC_008570:2014151*2014151204014925999Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome5e-32147BLASTN svgBLASTP svg
NC_015968:28457512845751288222136471Enterobacter asburiae LF7a chromosome, complete genome9e-31143BLASTN svgBLASTP svg
AC_000091:55892055892058720428285Escherichia coli W3110 DNA, complete genome3e-27131BLASTN svgBLASTP svg
NC_000913:558920*55892058509926180Escherichia coli K12, complete genome3e-27131BLASTN svgBLASTP svg
NC_010473:498252*49825252418825937Escherichia coli str. K-12 substr. DH10B, complete genome3e-27131BLASTN svgBLASTP svg
NC_011138:3182807*3182807321165528849Alteromonas macleodii 'Deep ecotype', complete genome3e-27131BLASTN svgBLASTP svg
NC_011750:527470*52747055213724668Escherichia coli IAI39 chromosome, complete genome3e-27131BLASTN svgBLASTP svg
NC_011751:643976*64397666569121716Escherichia coli UMN026 chromosome, complete genome3e-27131BLASTN svgBLASTP svg
NC_013282:25827202582720260756224843Cronobacter turicensis, complete genome3e-27131BLASTN svgBLASTP svg
NC_013592:32128343212834324883336000Dickeya dadantii Ech586, complete genome5e-26127BLASTN svgBLASTP svg
NC_010804:1334581*1334581135591721337Burkholderia multivorans ATCC 17616 chromosome 1, complete5e-26127BLASTN svgBLASTP svg
NC_012917:32411963241196329451553320Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-23119BLASTN svgBLASTP svg
NC_015663:2807574*2807574283616128588Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-23119BLASTN svgBLASTP svg
NC_014216:2538500*2538500256387025371Desulfurivibrio alkaliphilus AHT2 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_014011:962474*96247498859926126Aminobacterium colombiense DSM 12261 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_013851:2317091*2317091233893321843Allochromatium vinosum DSM 180 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_013956:12075001207500123738329884Pantoea ananatis LMG 20103 chromosome, complete genome8e-22113BLASTN svgBLASTP svg
NC_014837:1144500*1144500117382529326Pantoea sp. At-9b chromosome, complete genome3e-21111BLASTN svgBLASTP svg
NC_014562:469154*46915449304023887Pantoea vagans C9-1 chromosome, complete genome3e-21111BLASTN svgBLASTP svg
NC_014306:1286248*1286248131002823781Erwinia billingiae Eb661, complete genome3e-21111BLASTN svgBLASTP svg
NC_012214:2805297*2805297283239127095Erwinia pyrifoliae Ep1/96, complete genome3e-21111BLASTN svgBLASTP svg
NC_020064:1150982*1150982117040619425Serratia marcescens FGI94, complete genome5e-20107BLASTN svgBLASTP svg
NC_012559:978419*978419100401325595Laribacter hongkongensis HLHK9, complete genome2e-19105BLASTN svgBLASTP svg
NC_007712:1182518*1182518121806435547Sodalis glossinidius str. 'morsitans', complete genome7e-19103BLASTN svgBLASTP svg
NC_009832:1280938*1280938130408723150Serratia proteamaculans 568, complete genome7e-19103BLASTN svgBLASTP svg
NC_010465:3431500*3431500345664825149Yersinia pseudotuberculosis YPIII, complete genome7e-19103BLASTN svgBLASTP svg
NC_013421:15051761505176152341618241Pectobacterium wasabiae WPP163, complete genome7e-19103BLASTN svgBLASTP svg
NC_015566:1206500*1206500124185935360Serratia sp. AS12 chromosome, complete genome7e-19103BLASTN svgBLASTP svg
NC_015567:1206727*1206727124209935373Serratia sp. AS9 chromosome, complete genome7e-19103BLASTN svgBLASTP svg
NC_013595:81621818162181819649034310Streptosporangium roseum DSM 43021, complete genome3e-18101BLASTN svgBLASTP svg
NC_013171:228356*22835625488926534Anaerococcus prevotii DSM 20548, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_012526:157000*15700017910522106Deinococcus deserti VCD115, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_002505:23856923856927414635578Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete2e-1695.6BLASTN svgBLASTP svg
NC_007434:1809946*1809946187124661301Burkholderia pseudomallei 1710b chromosome I, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_007651:3064530*30645303173670109141Burkholderia thailandensis E264 chromosome I, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_009074:14706891470689150586435176Burkholderia pseudomallei 668 chromosome I, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_015663:2090442*2090442212127330832Enterobacter aerogenes KCTC 2190 chromosome, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_003317:1263562*1263562128225718696Brucella melitensis 16M chromosome I, complete sequence7e-1693.7BLASTN svgBLASTP svg
NC_020064:27798642779864280221322350Serratia marcescens FGI94, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008563:318993*31899336258343591Escherichia coli APEC O1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009800:349592*34959238017230581Escherichia coli HS, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_012440:1841315*1841315186760426290Persephonella marina EX-H1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013729:22878842287884231009922216Kribbella flavida DSM 17836, complete genome1e-1489.7BLASTN svgBLASTP svg
AC_000091:30371930371932647122753Escherichia coli W3110 DNA, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_000913:303719*30371932647122753Escherichia coli K12, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_004545:499709*49970952921829510Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome4e-1487.7BLASTN svgBLASTP svg
NC_010473:27994827994830350723560Escherichia coli str. K-12 substr. DH10B, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_012724:13080001308000132909921100Burkholderia glumae BGR1 chromosome 1, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_012778:403962*40396242480720846Eubacterium eligens ATCC 27750, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_020134:1173000*1173000119554722548Clostridium stercorarium subsp. stercorarium DSM 8532, complete4e-1487.7BLASTN svgBLASTP svg
NC_020126:2883194*2883194290469121498Myxococcus stipitatus DSM 14675, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007760:3848190*3848190387276224573Anaeromyxobacter dehalogenans 2CP-C, complete genome2e-1385.7BLASTN svgBLASTP svg
AP010958:60471960471962691322195Escherichia coli O103:H2 str. 12009 DNA, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_007645:2204066*2204066222275718692Hahella chejuensis KCTC 2396, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010473:62381062381065051726708Escherichia coli str. K-12 substr. DH10B, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010694:89196789196791664424678Erwinia tasmaniensis, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_011661:1100576*1100576112031619741Dictyoglomus turgidum DSM 6724, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_011751:68041768041770234121925Escherichia coli UMN026 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_012560:2348202*2348202238326135060Azotobacter vinelandii DJ, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_021150:2348214*2348214238327335060Azotobacter vinelandii CA6, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_004129:4596040*4596040462128225243Pseudomonas fluorescens Pf-5, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004431:364000*36400042492660927Escherichia coli CFT073, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008261:2770468*2770468279579025323Clostridium perfringens ATCC 13124, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008262:2433979*2433979246848234504Clostridium perfringens SM101, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010730:952574*95257497119218619Sulfurihydrogenibium sp. YO3AOP1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012039:1399699*1399699142559925901Campylobacter lari RM2100, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013446:1724000*1724000175930835309Comamonas testosteroni CNB-2, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014973:1257625*1257625128014722523Geobacter sp. M18 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_019978:1816940*1816940184397027031Halobacteroides halobius DSM 5150, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_005303:272915*27291531815445240Onion yellows phytoplasma OY-M, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008555:12040001204000124219438195Listeria welshimeri serovar 6b str. SLCC5334, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009778:29512072951207297908827882Enterobacter sakazakii ATCC BAA-894, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010424:1563033*1563033159550932477Candidatus Desulforudis audaxviator MP104C, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012214:89720689720692299825793Erwinia pyrifoliae Ep1/96, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013961:29323482932348295697724630Erwinia amylovora, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_014964:1695000*1695000172192326924Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, complete4e-1177.8BLASTN svgBLASTP svg
NC_021066:32015003201500323157930080Raoultella ornithinolytica B6, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_015410:2351464*2351464238751136048Pseudomonas mendocina NK-01 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013961:3413011*3413011343613523125Erwinia amylovora, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011083:374000*37400039609922100Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-1075.8BLASTN svgBLASTP svg
NC_003295:16540001654000167617622177Ralstonia solanacearum GMI1000, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_006905:368942*36894239327424333Salmonella enterica subsp. enterica serovar Choleraesuis str7e-1073.8BLASTN svgBLASTP svg
NC_007798:260324*26032428184521522Neorickettsia sennetsu str. Miyayama, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_012691:2050957*2050957206859917643Tolumonas auensis DSM 9187, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013009:270000*27000029310323104Neorickettsia risticii str. Illinois, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_003454:63500*6350010726843769Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete3e-0971.9BLASTN svgBLASTP svg
NC_004578:4204235*4204235422545421220Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007516:53250053250055441121912Synechococcus sp. CC9605, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008319:18295711829571184827718707Synechococcus sp. CC9311, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_006270:28503542850354287473324380Bacillus licheniformis ATCC 14580, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008380:2210649*2210649225616245514Rhizobium leguminosarum bv. viciae 3841, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006322:28512152851215287524024026Bacillus licheniformis ATCC 14580, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006087:1334500*1334500136229227793Leifsonia xyli subsp. xyli str. CTCB07, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014210:4122514*4122514414859926086Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,4e-0867.9BLASTN svgBLASTP svg
NC_018524:557666*55766659660438939Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014833:3444550*3444550347132026771Ruminococcus albus 7 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014152:1*13408834088Thermincola sp. JR, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002939:1926084*1926084196150735424Geobacter sulfurreducens PCA, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003919:1203405*1203405123359930195Xanthomonas axonopodis pv. citri str. 306, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_010376:606000*60600062469418695Finegoldia magna ATCC 29328, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014364:30015973001597303396632370Spirochaeta smaragdinae DSM 11293 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015942:63440*634408731823879Acidithiobacillus ferrivorans SS3 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_018870:427357*42735744729619940Thermacetogenium phaeum DSM 12270 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_007513:1721359*1721359174344122083Synechococcus sp. CC9902, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008529:1265958*1265958128814222185Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete2e-0661.9BLASTN svgBLASTP svg
NC_013131:7401253*7401253742304021788Catenulispora acidiphila DSM 44928, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013510:4484000*4484000450600622007Thermomonospora curvata DSM 43183, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013729:22585822258582228513126550Kribbella flavida DSM 17836, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013791:57984257984259814318302Bacillus pseudofirmus OF4 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014220:2398334*2398334242099922666Syntrophothermus lipocalidus DSM 12680 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014734:183214*18321420946526252Paludibacter propionicigenes WB4 chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_013510:991827*991827101259920773Thermomonospora curvata DSM 43183, complete genome1e-0560BLASTN svgBLASTP svg
NC_008513:343540*34354036517621637Buchnera aphidicola str. Cc (Cinara cedri), complete genome1e-0560BLASTN svgBLASTP svg