Query: NC_011080:2761403 Salmonella enterica subsp. enterica serovar Newport str. SL254,
Start: 2761403, End: 2779599, Length: 18197
Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_010102:1829357 | 1829357 | 1854176 | 24820 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, | 0 | 8138 | BLASTN svg | BLASTP svg |
NC_013850:2182337 | 2182337 | 2249099 | 66763 | Klebsiella variicola At-22 chromosome, complete genome | 0 | 973 | BLASTN svg | BLASTP svg |
NC_015663:4522109 | 4522109 | 4549042 | 26934 | Enterobacter aerogenes KCTC 2190 chromosome, complete genome | 0 | 948 | BLASTN svg | BLASTP svg |
NC_009792:1770106 | 1770106 | 1794906 | 24801 | Citrobacter koseri ATCC BAA-895, complete genome | 0 | 785 | BLASTN svg | BLASTP svg |
NC_009648:1541699* | 1541699 | 1600109 | 58411 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome | 2e-163 | 583 | BLASTN svg | BLASTP svg |
NC_020181:929000 | 929000 | 963030 | 34031 | Enterobacter aerogenes EA1509E, complete genome | 4e-60 | 240 | BLASTN svg | BLASTP svg |
NC_011740:2769961 | 2769961 | 2789599 | 19639 | Escherichia fergusonii ATCC 35469, complete genome | 5e-41 | 176 | BLASTN svg | BLASTP svg |
NC_011751:643976* | 643976 | 665691 | 21716 | Escherichia coli UMN026 chromosome, complete genome | 1e-38 | 168 | BLASTN svg | BLASTP svg |
NC_007384:2933625* | 2933625 | 2957709 | 24085 | Shigella sonnei Ss046, complete genome | 1e-35 | 159 | BLASTN svg | BLASTP svg |
CU928145:824367 | 824367 | 843781 | 19415 | Escherichia coli 55989 chromosome, complete genome | 3e-30 | 141 | BLASTN svg | BLASTP svg |
NC_011748:824367 | 824367 | 843781 | 19415 | Escherichia coli 55989, complete genome | 3e-30 | 141 | BLASTN svg | BLASTP svg |
NC_003198:1908238 | 1908238 | 1935178 | 26941 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 5e-29 | 137 | BLASTN svg | BLASTP svg |
NC_020063:2565605* | 2565605 | 2599272 | 33668 | Enterobacteriaceae bacterium strain FGI 57, complete genome | 1e-23 | 119 | BLASTN svg | BLASTP svg |
NC_009800:289000* | 289000 | 310389 | 21390 | Escherichia coli HS, complete genome | 2e-19 | 105 | BLASTN svg | BLASTP svg |
NC_006905:1342474 | 1342474 | 1378111 | 35638 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_004631:1182883* | 1182883 | 1214599 | 31717 | Salmonella enterica subsp. enterica serovar Typhi Ty2, complete | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_003197:1320861* | 1320861 | 1347384 | 26524 | Salmonella typhimurium LT2, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_020211:2094500 | 2094500 | 2112099 | 17600 | Serratia marcescens WW4, complete genome | 6e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_012779:1966205 | 1966205 | 1986099 | 19895 | Edwardsiella ictaluri 93-146, complete genome | 4e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_013508:1687432 | 1687432 | 1721099 | 33668 | Edwardsiella tarda EIB202, complete genome | 4e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_011083:374000* | 374000 | 396099 | 22100 | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, | 1e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_009801:2193000 | 2193000 | 2219755 | 26756 | Escherichia coli E24377A, complete genome | 1e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_007712:3067000 | 3067000 | 3103681 | 36682 | Sodalis glossinidius str. 'morsitans', complete genome | 6e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_020181:5217000 | 5217000 | 5247099 | 30100 | Enterobacter aerogenes EA1509E, complete genome | 9e-12 | 79.8 | BLASTN svg | BLASTP svg |
NC_021066:2226826* | 2226826 | 2254226 | 27401 | Raoultella ornithinolytica B6, complete genome | 4e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_010067:892729* | 892729 | 925238 | 32510 | Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete | 6e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_003197:1945858* | 1945858 | 1974728 | 28871 | Salmonella typhimurium LT2, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_010102:1137247 | 1137247 | 1162987 | 25741 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_011080:1944226* | 1944226 | 1980352 | 36127 | Salmonella enterica subsp. enterica serovar Newport str. SL254, | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_011083:1993672* | 1993672 | 2019305 | 25634 | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_013716:2764550 | 2764550 | 2798382 | 33833 | Citrobacter rodentium ICC168, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_015224:2017781 | 2017781 | 2040352 | 22572 | Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome, | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_010554:539122 | 539122 | 561365 | 22244 | Proteus mirabilis HI4320, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_008563:2946391* | 2946391 | 2966672 | 20282 | Escherichia coli APEC O1, complete genome | 8e-06 | 60 | BLASTN svg | BLASTP svg |
NC_007946:2931364 | 2931364 | 2950512 | 19149 | Escherichia coli UTI89, complete genome | 8e-06 | 60 | BLASTN svg | BLASTP svg |
NC_006511:1243817 | 1243817 | 1266299 | 22483 | Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC | 8e-06 | 60 | BLASTN svg | BLASTP svg |
NC_004431:3040953 | 3040953 | 3063934 | 22982 | Escherichia coli CFT073, complete genome | 8e-06 | 60 | BLASTN svg | BLASTP svg |