Pre_GI: BLASTN Hits

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Query: NC_011080:2161696 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2161696, End: 2198375, Length: 36680

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011083:22006132200613223455433942Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,029990BLASTN svgBLASTP svg
NC_003198:21097752109775214492235148Salmonella enterica subsp. enterica serovar Typhi str. CT18,029550BLASTN svgBLASTP svg
NC_011149:21108612110861214483233972Salmonella enterica subsp. enterica serovar Agona str. SL483,027330BLASTN svgBLASTP svg
NC_003197:21529942152994218696633973Salmonella typhimurium LT2, complete genome027320BLASTN svgBLASTP svg
NC_010102:86186086186089518233323Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,024210BLASTN svgBLASTP svg
NC_004631:86200286200289659934598Salmonella enterica subsp. enterica serovar Typhi Ty2, complete023940BLASTN svgBLASTP svg
NC_006511:85478585478589509940315Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC020380BLASTN svgBLASTP svg
NC_006905:21753612175361220410628746Salmonella enterica subsp. enterica serovar Choleraesuis str015570BLASTN svgBLASTP svg
NC_010067:80712980712983359926471Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete011180BLASTN svgBLASTP svg
NC_009792:71495371495374483829886Citrobacter koseri ATCC BAA-895, complete genome02809BLASTN svgBLASTP svg
NC_011750:10349191034919106622831310Escherichia coli IAI39 chromosome, complete genome02585BLASTN svgBLASTP svg
NC_010658:10901041090104112159931496Shigella boydii CDC 3083-94, complete genome02555BLASTN svgBLASTP svg
NC_011748:23244952324495235493330439Escherichia coli 55989, complete genome02529BLASTN svgBLASTP svg
CU928145:23244952324495235493330439Escherichia coli 55989 chromosome, complete genome02529BLASTN svgBLASTP svg
CP002516:18464921846492187615129660Escherichia coli KO11, complete genome02526BLASTN svgBLASTP svg
NC_007606:19998701999870202709927230Shigella dysenteriae Sd197, complete genome02522BLASTN svgBLASTP svg
NC_010468:17750001775000180518230183Escherichia coli ATCC 8739, complete genome02506BLASTN svgBLASTP svg
NC_009801:22761312276131230753131401Escherichia coli E24377A, complete genome02506BLASTN svgBLASTP svg
NC_008563:21822702182270221156429295Escherichia coli APEC O1, complete genome02492BLASTN svgBLASTP svg
NC_010498:10354061035406106309927694Escherichia coli SMS-3-5, complete genome02490BLASTN svgBLASTP svg
NC_011751:23958822395882242503029149Escherichia coli UMN026 chromosome, complete genome02484BLASTN svgBLASTP svg
NC_008258:21006462100646213188931244Shigella flexneri 5 str. 8401, complete genome02482BLASTN svgBLASTP svg
NC_004741:20816492081649211300631358Shigella flexneri 2a str. 2457T, complete genome02482BLASTN svgBLASTP svg
NC_004337:20987362098736212859929864Shigella flexneri 2a str. 301, complete genome02482BLASTN svgBLASTP svg
AP010958:25040722504072253559331522Escherichia coli O103:H2 str. 12009 DNA, complete genome02460BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome02450BLASTN svgBLASTP svg
NC_013716:22551022255102228502629925Citrobacter rodentium ICC168, complete genome02434BLASTN svgBLASTP svg
NC_010473:21835672183567221209928533Escherichia coli str. K-12 substr. DH10B, complete genome01822BLASTN svgBLASTP svg
NC_000913:20925592092559212109928541Escherichia coli K12, complete genome01822BLASTN svgBLASTP svg
AC_000091:20966722096672212665729986Escherichia coli W3110 DNA, complete genome01822BLASTN svgBLASTP svg
NC_020063:16597951659795169109931305Enterobacteriaceae bacterium strain FGI 57, complete genome01782BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome01766BLASTN svgBLASTP svg
NC_021066:46029246029251915858867Raoultella ornithinolytica B6, complete genome01596BLASTN svgBLASTP svg
NC_014121:33996853399685343519435510Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01564BLASTN svgBLASTP svg
NC_009648:26997392699739273776838030Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome01495BLASTN svgBLASTP svg
CP002185:22337322233732226508731356Escherichia coli W, complete genome01405BLASTN svgBLASTP svg
NC_013282:28277572827757286060332847Cronobacter turicensis, complete genome01316BLASTN svgBLASTP svg
NC_020260:11841741184174121484630673Cronobacter sakazakii Sp291, complete genome01283BLASTN svgBLASTP svg
NC_009778:11417161141716117336531650Enterobacter sakazakii ATCC BAA-894, complete genome01203BLASTN svgBLASTP svg
NC_015663:49500004950000501991769918Enterobacter aerogenes KCTC 2190 chromosome, complete genome01187BLASTN svgBLASTP svg
NC_020181:36050036050040550545006Enterobacter aerogenes EA1509E, complete genome01187BLASTN svgBLASTP svg
NC_011740:21351412135141215307917939Escherichia fergusonii ATCC 35469, complete genome01144BLASTN svgBLASTP svg
NC_015968:29753512975351299850323153Enterobacter asburiae LF7a chromosome, complete genome01130BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome01059BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome01059BLASTN svgBLASTP svg
NC_002655:28396002839600287010630507Escherichia coli O157:H7 EDL933, complete genome01057BLASTN svgBLASTP svg
NC_002695:27693872769387279989230506Escherichia coli O157:H7 str. Sakai, complete genome01057BLASTN svgBLASTP svg
CU928160:21559472155947218736531419Escherichia coli IAI1 chromosome, complete genome01049BLASTN svgBLASTP svg
NC_013850:16580101658010169680438795Klebsiella variicola At-22 chromosome, complete genome01021BLASTN svgBLASTP svg
NC_009800:21560912156091218719031100Escherichia coli HS, complete genome0993BLASTN svgBLASTP svg
NC_015061:19022511902251193341231162Rahnella sp. Y9602 chromosome, complete genome2e-171611BLASTN svgBLASTP svg
NC_014837:2803447*2803447283151828072Pantoea sp. At-9b chromosome, complete genome2e-165591BLASTN svgBLASTP svg
NC_013961:2260250*2260250228983729588Erwinia amylovora, complete genome1e-154555BLASTN svgBLASTP svg
NC_010694:15020191502019153332131303Erwinia tasmaniensis, complete genome3e-152547BLASTN svgBLASTP svg
NC_014306:32103113210311325712846818Erwinia billingiae Eb661, complete genome4e-139504BLASTN svgBLASTP svg
NC_014562:20499212049921207971629796Pantoea vagans C9-1 chromosome, complete genome2e-131478BLASTN svgBLASTP svg
NC_012917:15060831506083154696940887Pectobacterium carotovorum subsp. carotovorum PC1, complete genome5e-126460BLASTN svgBLASTP svg
NC_013956:27496852749685278184532161Pantoea ananatis LMG 20103 chromosome, complete genome1e-105392BLASTN svgBLASTP svg
NC_015224:17638481763848179825034403Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-86327BLASTN svgBLASTP svg
NC_013421:32794993279499331516735669Pectobacterium wasabiae WPP163, complete genome9e-66260BLASTN svgBLASTP svg
NC_012779:12865001286500132459938100Edwardsiella ictaluri 93-146, complete genome2e-60242BLASTN svgBLASTP svg
NC_013508:1289159*1289159133392244764Edwardsiella tarda EIB202, complete genome2e-51212BLASTN svgBLASTP svg
NC_006155:11913071191307123066739361Yersinia pseudotuberculosis IP 32953, complete genome2e-48202BLASTN svgBLASTP svg
NC_010465:34653513465351350059935249Yersinia pseudotuberculosis YPIII, complete genome1e-43186BLASTN svgBLASTP svg
NC_010634:11754041175404121321037807Yersinia pseudotuberculosis PB1/+, complete genome2e-39172BLASTN svgBLASTP svg
NC_010159:30339893033989305747023482Yersinia pestis Angola, complete genome2e-39172BLASTN svgBLASTP svg
NC_008150:28784502878450291443935990Yersinia pestis Antiqua, complete genome2e-39172BLASTN svgBLASTP svg
NC_008149:11226931122693115815435462Yersinia pestis Nepal516, complete genome2e-39172BLASTN svgBLASTP svg
NC_005810:87267287267291210839437Yersinia pestis biovar Microtus str. 91001, complete genome2e-39172BLASTN svgBLASTP svg
NC_004088:11968751196875123427537401Yersinia pestis KIM, complete genome2e-39172BLASTN svgBLASTP svg
NC_013592:713036*71303676182148786Dickeya dadantii Ech586, complete genome6e-36161BLASTN svgBLASTP svg
NC_009997:35831663583166360265419489Shewanella baltica OS195, complete genome4e-28135BLASTN svgBLASTP svg
NC_020211:17045001704500175039445895Serratia marcescens WW4, complete genome2e-26129BLASTN svgBLASTP svg
NC_009348:14759551475955153571059756Aeromonas salmonicida subsp. salmonicida A449, complete genome9e-26127BLASTN svgBLASTP svg
NC_006300:60051660051663151030995Mannheimia succiniciproducens MBEL55E, complete genome9e-26127BLASTN svgBLASTP svg
NC_013446:3147202*3147202318258835387Comamonas testosteroni CNB-2, complete genome3e-25125BLASTN svgBLASTP svg
NC_012913:62644962644965161725169Aggregatibacter aphrophilus NJ8700, complete genome3e-25125BLASTN svgBLASTP svg
NC_010939:1633000*1633000166140328404Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete3e-25125BLASTN svgBLASTP svg
NC_008570:3220539*3220539328055660018Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome3e-25125BLASTN svgBLASTP svg
NC_010334:1783500*1783500181555632057Shewanella halifaxensis HAW-EB4, complete genome1e-24123BLASTN svgBLASTP svg
NC_014758:12078941207894123842730534Calditerrivibrio nitroreducens DSM 19672 chromosome, complete5e-24121BLASTN svgBLASTP svg
NC_009092:15995261599526164486445339Shewanella loihica PV-4, complete genome2e-23119BLASTN svgBLASTP svg
NC_013446:4723380*4723380475330129922Comamonas testosteroni CNB-2, complete genome8e-23117BLASTN svgBLASTP svg
NC_004547:16009001600900162975328854Erwinia carotovora subsp. atroseptica SCRI1043, complete genome8e-23117BLASTN svgBLASTP svg
NC_015633:41358741358744184328257Vibrio anguillarum 775 chromosome chromosome I, complete sequence5e-21111BLASTN svgBLASTP svg
NC_015424:16895001689500172544435945Aeromonas veronii B565 chromosome, complete genome2e-20109BLASTN svgBLASTP svg
NC_014839:253961*25396131222658266Pantoea sp. At-9b plasmid pPAT9B02, complete sequence2e-20109BLASTN svgBLASTP svg
NC_012691:22250002225000224630921310Tolumonas auensis DSM 9187, complete genome8e-20107BLASTN svgBLASTP svg
NC_014972:54414654414658609941954Desulfobulbus propionicus DSM 2032 chromosome, complete genome3e-19105BLASTN svgBLASTP svg
NC_009831:36122063612206365403941834Shewanella sediminis HAW-EB3, complete genome3e-19105BLASTN svgBLASTP svg
NC_008321:1523323*1523323156037837056Shewanella sp. MR-4, complete genome1e-18103BLASTN svgBLASTP svg
NC_014500:14916601491660151533923680Dickeya dadantii 3937 chromosome, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_020064:15475241547524158410636583Serratia marcescens FGI94, complete genome8e-1797.6BLASTN svgBLASTP svg
NC_014012:16769831676983170572328741Shewanella violacea DSS12, complete genome8e-1797.6BLASTN svgBLASTP svg
NC_010531:292044*29204432956237519Polynucleobacter necessarius STIR1, complete genome8e-1797.6BLASTN svgBLASTP svg
NC_012791:82137182137185170230332Variovorax paradoxus S110 chromosome 1, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_009053:1668500*1668500169468326184Actinobacillus pleuropneumoniae L20, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_005085:43353334335333437106535733Chromobacterium violaceum ATCC 12472, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_004603:23000023000025659726598Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete5e-1591.7BLASTN svgBLASTP svg
NC_007520:1627978*1627978164652818551Thiomicrospira crunogena XCL-2, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_009009:1792317*1792317181459922283Streptococcus sanguinis SK36, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_015942:11677851167785119371425930Acidithiobacillus ferrivorans SS3 chromosome, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_012214:15885731588573162042231850Erwinia pyrifoliae Ep1/96, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_011992:57100057100058859917600Acidovorax ebreus TPSY, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_006576:1551939*1551939158375331815Synechococcus elongatus PCC 6301, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_004129:5846415*5846415588159935185Pseudomonas fluorescens Pf-5, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_009901:1693500*1693500173209938600Shewanella pealeana ATCC 700345, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_015061:3840463*3840463391463974177Rahnella sp. Y9602 chromosome, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_015566:16592881659288170119441907Serratia sp. AS12 chromosome, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_015567:16604621660462170120640745Serratia sp. AS9 chromosome, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_012880:31252613125261315478529525Dickeya dadantii Ech703, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_007954:3171081*3171081321159940519Shewanella denitrificans OS217, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_000911:35226335226339172939467Synechocystis sp. PCC 6803, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_014935:1999653*1999653203169432042Nitratifractor saLSUginis DSM 16511 chromosome, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_019745:3217552*3217552324009922548Gloeocapsa sp. PCC 7428, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_002516:24363042436304246509928796Pseudomonas aeruginosa PAO1, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_005966:69689696899119521507Acinetobacter sp. ADP1, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_008702:2039462*2039462206354724086Azoarcus sp. BH72, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_013416:16214691621469165023328765Aggregatibacter actinomycetemcomitans D11S-1, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_014541:475350*47535053312757778Ferrimonas balearica DSM 9799 chromosome, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_015185:13521711352171137893326763Desulfurobacterium thermolithotrophum DSM 11699 chromosome,3e-1075.8BLASTN svgBLASTP svg
NC_018691:1864796*1864796190445339658Alcanivorax dieselolei B5 chromosome, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_012997:1446037*1446037147363527599Teredinibacter turnerae T7901, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_008260:1044440*1044440106265118212Alcanivorax borkumensis SK2, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007712:16014991601499163292631428Sodalis glossinidius str. 'morsitans', complete genome4e-0971.9BLASTN svgBLASTP svg
NC_008577:15799501579950160290022951Shewanella sp. ANA-3 chromosome 1, complete sequence4e-0971.9BLASTN svgBLASTP svg
NC_009052:33819433381943341170229760Shewanella baltica OS155, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_011884:14138311413831143422620396Cyanothece sp. PCC 7425, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_014541:11659911165991120221836228Ferrimonas balearica DSM 9799 chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_003450:35975935975940443344675Corynebacterium glutamicum ATCC 13032, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_005139:30542030542033120425785Vibrio vulnificus YJ016 chromosome I, complete sequence2e-0869.9BLASTN svgBLASTP svg
NC_005139:34350034350037669433195Vibrio vulnificus YJ016 chromosome I, complete sequence2e-0869.9BLASTN svgBLASTP svg
NC_006958:35976035976040443244673Corynebacterium glutamicum ATCC 13032, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014219:3254268*3254268329570341436Bacillus selenitireducens MLS10 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015573:17290571729057175782628770Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015856:940625*94062598805147427Collimonas fungivorans Ter331 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_020211:554736*55473659042335688Serratia marcescens WW4, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_004459:767127*76712778659919473Vibrio vulnificus CMCP6 chromosome I, complete sequence7e-0867.9BLASTN svgBLASTP svg
NC_008312:27984632798463282561927157Trichodesmium erythraeum IMS101, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_009052:71058710589215921102Shewanella baltica OS155, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_010501:15189591518959154333524377Pseudomonas putida W619, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_011027:1570955*1570955160679635842Chlorobaculum parvum NCIB 8327, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_018868:569423*56942361904449622Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_016002:3704006*3704006373059326588Pseudogulbenkiania sp. NH8B, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008228:36799493679949370368623738Pseudoalteromonas atlantica T6c, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_007492:45639814563981458949625516Pseudomonas fluorescens PfO-1, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_007912:26975812697581271653118951Saccharophagus degradans 2-40, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_008781:36889653688965371374824784Polaromonas naphthalenivorans CJ2, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014394:30367583036758307034433587Gallionella capsiferriformans ES-2 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014958:31311913131191315796026770Deinococcus maricopensis DSM 21211 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015144:997587*997587102029322707Weeksella virosa DSM 16922 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_004668:1010610*1010610103713326524Enterococcus faecalis V583, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_005140:44435344435346518620834Vibrio vulnificus YJ016 chromosome II, complete sequence4e-0661.9BLASTN svgBLASTP svg
NC_007973:29520042952004297379621793Ralstonia metallidurans CH34 chromosome 1, complete sequence4e-0661.9BLASTN svgBLASTP svg
NC_009832:17191491719149175798638838Serratia proteamaculans 568, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_009850:661802*66180268186120060Arcobacter butzleri RM4018, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013209:2782500*2782500280575023251Acetobacter pasteurianus IFO 3283-01, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013406:2207520*2207520223225024731Paenibacillus sp. Y412MC10 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013422:16041571604157162347719321Halothiobacillus neapolitanus c2, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_004460:17180881718088173988521798Vibrio vulnificus CMCP6 chromosome II, complete sequence4e-0661.9BLASTN svgBLASTP svg