Pre_GI: BLASTP Hits

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Query: NC_011080:780850:799382 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 799382, End: 800428, Length: 1047

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:775636:7941687941687952141047Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein6e-148523
NC_016863:776734:7952677952677963131047Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transport protein6e-148523
NC_016860:816000:8336018336018346471047Salmonella enterica subsp. enterica serovar Typhimurium strprotein AbrB6e-148523
NC_016857:775649:7941827941827952281047Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transport protein6e-148523
NC_016856:776735:7952687952687963141047Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transport protein6e-148523
NC_003197:776238:7947717947717958171047Salmonella typhimurium LT2, complete genomeputative transport protein6e-148523
NC_011094:842038:8605208605208615661047Salmonella enterica subsp. enterica serovar Schwarzengrund strprotein AbrB7e-147520
NC_016810:775649:794182794182795144963Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-146519
NC_004631:2205821:2210492221049222115381047Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-146519
NC_003198:751779:7695517695517705971047Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-146519
NC_016832:2201860:2207264220726422083101047Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-146519
NC_011147:2085241:2089912208991220909581047Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-146518
NC_006511:2090058:2094729209472920957751047Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-146518
NC_011083:824659:8431808431808442261047Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,protein AbrB2e-146518
NC_010102:2322866:2328270232827023293161047Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-145514
NC_012967:707083:7275087275087285541047Escherichia coli B str. REL606 chromosome, complete genomeputative regulator7e-123440
CP002185:794732:8173858173858184311047Escherichia coli W, complete genomepredicted regulator3e-122438
NC_021066:1778000:1794175179417517952301056Raoultella ornithinolytica B6, complete genomeaidB regulatorAbrB3e-94345
NC_012731:2261787:2261787226178722628391053Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative transport protein5e-83308
NC_015663:4447984:4467534446753444685711038Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transport protein3e-82305
NC_011666:1923776:1923776192377619248761101Methylocella silvestris BL2, complete genomemembrane protein AbrB duplication1e-49196
NC_010501:2609567:2642531264253126435951065Pseudomonas putida W619, complete genomemembrane protein AbrB duplication8e-47187
NC_015379:2505233:2539690253969025407721083Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein1e-43177
NC_017059:2739015:2761100276110027623561257Rhodospirillum photometricum DSM 122, complete genomePutative ammonia monooxygenase6e-37155
NC_007963:3113739:3123987312398731251201134Chromohalobacter salexigens DSM 3043, complete genomeputative ammonia monooxygenase3e-34146
NC_016147:3349272:3349272334927233503661095Pseudoxanthomonas spadix BD-a59 chromosome, complete genomemembrane protein2e-29130
NC_015410:3093465:3124656312465631257621107Pseudomonas mendocina NK-01 chromosome, complete genomemembrane protein AbrB duplication3e-26119
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome2e-0963.5