Pre_GI: BLASTP Hits

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Query: NC_011080:780850:798350 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 798350, End: 798487, Length: 138

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:2322866:233019623301962330348153Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-1993.6
NC_003197:776238:793739793739793876138Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein4e-1993.6
NC_011094:842038:859488859488859625138Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-1993.6
NC_016810:775649:793150793150793287138Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-1993.6
NC_016856:776735:794236794236794373138Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein4e-1993.6
NC_016857:775649:793150793150793287138Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein4e-1993.6
NC_016860:816000:832569832569832706138Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-1993.6
NC_016863:776734:794235794235794372138Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein4e-1993.6
NC_017046:775636:793136793136793273138Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein4e-1993.6
NC_003198:751779:768519768519768671153Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein9e-1992.4
NC_016832:2201860:220919022091902209342153Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein9e-1992.4
NC_011083:824659:842148842148842285138Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein7e-1992.4
NC_006511:2090058:209667020966702096807138Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein7e-1992.4
NC_011147:2085241:209185320918532091990138Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein7e-1992.4
NC_004631:2205821:221241822124182212570153Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein9e-1992.4