Pre_GI: BLASTP Hits

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Query: NC_011080:780850:795553 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 795553, End: 796329, Length: 777

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:751779:766138766138766971834Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein6e-127453
NC_004631:2205821:221411822141182214951834Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein6e-127453
NC_016863:776734:791381791381792214834Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative glycosyltransferase8e-127452
NC_016860:816000:829715829715830548834Salmonella enterica subsp. enterica serovar Typhimurium strputative glycosyl transferase8e-127452
NC_016857:775649:790296790296791129834Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative glycosyltransferase8e-127452
NC_016810:775649:790296790296791129834Salmonella enterica subsp. enterica serovar Typhimurium strputative glycosyltransferase, cell wall biogenesis8e-127452
NC_003197:776238:790885790885791718834Salmonella typhimurium LT2, complete genomeputative glycosyltransferase8e-127452
NC_017046:775636:790339790339791115777Salmonella enterica subsp. enterica serovar Typhimurium str. 798glycosyltransferase, cell wall biogenesis1e-126452
NC_006511:2090058:209882820988282099661834Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-126450
NC_011147:2085241:209401120940112094844834Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-126450
NC_016856:776735:791382791382792215834Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative glycosyltransferase4e-126450
NC_016832:2201860:221089022108902211657768Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-124445
NC_011083:824659:839360839360840127768Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative glycosyltransferase1e-123442
NC_010102:2322866:233236923323692333136768Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-123440
NC_011094:842038:856742856742857467726Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-111402
NC_009831:3612206:364098736409873641877891Shewanella sediminis HAW-EB3, complete genomeglycosyl transferase, family 22e-0859.7