Pre_GI: BLASTP Hits

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Query: NC_011080:780850:787644 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 787644, End: 788342, Length: 699

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011083:824659:831401831401832141741Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein7e-132469
NC_011147:2085241:210199721019972102737741Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-131466
NC_006511:2090058:210681421068142107554741Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein5e-131466
NC_011094:842038:848833848833849531699Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-130464
NC_016832:2201860:221887022188702219568699Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-130464
NC_010102:2322866:234035623403562341096741Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-130464
NC_003198:751779:758250758250758990741Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-130464
NC_003197:776238:782991782991783731741Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein2e-130464
NC_004631:2205821:222210522221052222845741Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-130464
NC_016810:775649:782402782402783142741Salmonella enterica subsp. enterica serovar Typhimurium strputative transport protein2e-130464
NC_016856:776735:783488783488784228741Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein2e-130464
NC_016857:775649:782402782402783142741Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein2e-130464
NC_016860:816000:821821821821822561741Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-130464
NC_016863:776734:783487783487784227741Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein2e-130464
NC_017046:775636:782389782389783129741Salmonella enterica subsp. enterica serovar Typhimurium str. 798transport protein2e-130464
NC_009800:349592:378463378463379224762Escherichia coli HS, complete genomehypothetical protein6e-35147
NC_011415:351810:361969361969362730762Escherichia coli SE11 chromosome, complete genomehypothetical protein6e-35147
NC_008253:334467:404549404549405310762Escherichia coli 536, complete genomeputative cytoplasmic protein1e-34146
NC_008563:318993:349445349445350206762Escherichia coli APEC O1, complete genomehypothetical protein7e-34144
NC_007946:289425:347853347853348614762Escherichia coli UTI89, complete genomehypothetical protein7e-34144
NC_004431:364000:412381412381413142762Escherichia coli CFT073, complete genomehypothetical protein8e-33140