Pre_GI: BLASTP Hits

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Query: NC_011080:780850:787454 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 787454, End: 787600, Length: 147

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:816000:821598821598821819222Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-1064.3
NC_016832:2201860:221961222196122219758147Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-1063.9
NC_010102:2322866:234109823410982341349252Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-1063.9
NC_003198:751779:757913757913758248336Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein6e-1062.8
NC_004631:2205821:222284722228472223182336Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein6e-1062.8
NC_003197:776238:782654782654782989336Salmonella typhimurium LT2, complete genomeputative inner membrane protein6e-1062.8
NC_016810:775649:782065782065782400336Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein6e-1062.8
NC_016856:776735:783151783151783486336Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein6e-1062.8
NC_016857:775649:782065782065782400336Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein6e-1062.8
NC_016863:776734:783150783150783485336Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein6e-1062.8
NC_011083:824659:831253831253831399147Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,7e-1062.4