Pre_GI: BLASTP Hits

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Query: NC_011080:780850:786049 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 786049, End: 786189, Length: 141

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011094:842038:847237847237847368132Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-1684.3
NC_003197:776238:781437781437781568132Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein3e-1684
NC_010102:2322866:234251923425192342650132Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-1684
NC_004631:2205821:222398622239862224117132Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-1684
NC_006511:2090058:210897621089762109107132Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-1684
NC_003198:751779:756978756978757109132Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-1684
NC_011147:2085241:210415921041592104290132Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-1684
NC_016810:775649:780848780848780979132Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-1684
NC_016832:2201860:222075122207512220882132Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-1684
NC_016856:776735:781934781934782065132Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein3e-1684
NC_016857:775649:780848780848780979132Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein3e-1684
NC_016863:776734:781933781933782064132Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein3e-1684
NC_017046:775636:780835780835780966132Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein3e-1684
NC_011083:824659:829858829858829989132Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein6e-1682.8