Pre_GI: BLASTP Hits

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Query: NC_011080:610428:626466 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 626466, End: 627026, Length: 561

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:2363136:236365523636552364215561Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-104377
NC_003198:598000:613687613687614247561Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-104377
NC_004631:2366335:236685423668542367414561Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-104377
NC_006511:2251022:225227622522762252836561Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-104377
NC_006905:651732:672211672211672771561Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein3e-104377
NC_011149:588895:604932604932605492561Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein3e-104377
NC_011094:688626:705008705008705568561Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-104377
NC_011147:2247460:224746022474602248020561Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-104377
NC_010102:2495441:249544124954412496001561Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-104375
NC_003197:606048:622059622059622619561Salmonella typhimurium LT2, complete genomeputative inner membrane protein7e-104375
NC_011083:654479:670489670489671049561Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,protein of unknown function, superfamily7e-104375
NC_011205:645591:667053667053667613561Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein7e-104375
NC_011274:603901:619889619889620449561Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein7e-104375
NC_011294:585500:601517601517602077561Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein7e-104375
NC_016810:604813:621547621547622107561Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-104375
NC_016856:606742:622753622753623313561Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein7e-104375
NC_016857:604792:621547621547622107561Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein7e-104375
NC_016860:644095:660106660106660666561Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-104375
NC_016863:606742:622752622752623312561Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein7e-104375
NC_017046:604789:621544621544622104561Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein7e-104375
NC_012125:600586:621039621039621599561Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-103375
NC_015761:520858:536668536668537228561Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-101368
NC_007946:289425:337692337692338294603Escherichia coli UTI89, complete genomehypothetical protein YkgB1e-89328
NC_008563:318993:339282339282339884603Escherichia coli APEC O1, complete genomehypothetical protein1e-89328
NC_004431:364000:402220402220402822603Escherichia coli CFT073, complete genomeHypothetical protein ykgB1e-89328
NC_011745:333061:354091354091354684594Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-89328
NC_011742:291237:327057327057327650594Escherichia coli S88 chromosome, complete genomehypothetical protein2e-89328
NC_008253:334467:394387394387394980594Escherichia coli 536, complete genomehypothetical protein2e-89328
AC_000091:303719:316950316950317543594Escherichia coli W3110 DNA, complete genomeconserved inner membrane protein4e-89327
NC_009800:349592:368323368323368916594Escherichia coli HS, complete genomehypothetical protein4e-89327
NC_010473:279948:292500292500293093594Escherichia coli str. K-12 substr. DH10B, complete genomeconserved inner membrane protein4e-89327
NC_000913:303719:316950316950317543594Escherichia coli K12, complete genomeconserved inner membrane protein4e-89327
NC_012947:3487392:349443734944373495030594Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein4e-89327
NC_011415:351810:351810351810352409600Escherichia coli SE11 chromosome, complete genomehypothetical protein6e-89326
NC_013941:378555:398963398963399556594Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-88325
NC_009614:3476000:349224634922463492833588Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein1e-43176
NC_008255:1500067:150769215076921508267576Cytophaga hutchinsonii ATCC 33406, complete genomehypothetical protein3e-39161
NC_015144:47783:873338733387935603Weeksella virosa DSM 16922 chromosome, complete genomehypothetical protein3e-35147
NC_008573:195317:216272216272216787516Shewanella sp. ANA-3 plasmid 1, complete sequenceprotein of unknown function DUF4177e-1373.6
NC_020211:1621000:162737716273771627841465Serratia marcescens WW4, complete genomeinner membrane protein, DUF417 family6e-1167
NC_008347:2515921:251883325188332519720888Maricaulis maris MCS10, complete genomeprotein of unknown function DUF4177e-1063.5
NC_008313:1956500:196774319677431968249507Ralstonia eutropha H16 chromosome 1, complete sequencehypothetical membrane spanning protein3e-0858.5
NC_009659:1050532:106214110621411062710570Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein2e-0652