Pre_GI: BLASTP Hits

Some Help

Query: NC_011080:610428:622554 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 622554, End: 622691, Length: 138

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:588895:600991600991601236246Salmonella enterica subsp. enterica serovar Agona str. SL483,copE13e-1993.6
NC_011094:688626:701068701068701313246Salmonella enterica subsp. enterica serovar Schwarzengrund strcopE11e-1891.7
NC_006511:2251022:225619822561982256443246Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible copper-binding protein3e-1890.5
NC_003198:598000:610081610081610326246Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible copper-binding protein3e-1890.5
NC_004631:2366335:237077523707752371020246Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible copper-binding protein3e-1890.5
NC_011147:2247460:225138222513822251627246Salmonella enterica subsp. enterica serovar Paratyphi A strcopper-binding protein3e-1890.5
NC_016832:2363136:236761523676152367821207Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-1890.1
NC_011205:645591:663139663139663384246Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-1787.8
NC_011274:603901:615976615976616221246Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-1685.1
NC_016831:2402893:240654924065492406794246Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative copper-binding protein1e-1685.1
NC_011294:585500:597603597603597848246Salmonella enterica subsp. enterica serovar Enteritidis strcopper-binding protein1e-1685.1