Pre_GI: BLASTP Hits

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Query: NC_011080:610428:616613 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 616613, End: 616834, Length: 222

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:644095:650280650280650588309Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-36149
NC_017046:604789:611718611718611939222Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein5e-36149
NC_003197:606048:612233612233612544312Salmonella typhimurium LT2, complete genomehypothetical protein4e-36149
NC_016810:604813:611721611721612032312Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-36149
NC_016856:606742:612927612927613238312Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein4e-36149
NC_016857:604792:611721611721612032312Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Putative diguanylate cyclase/phosphodiesterase domain 04e-36149
NC_016863:606742:612927612927613238312Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein4e-36149
NC_012125:600586:606771606771607082312Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein4e-36149
NC_010102:2495441:250554325055432505851309Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-36149
NC_016831:2402893:241246324124632412684222Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein8e-35145
NC_011274:603901:610086610086610397312Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein5e-35145
NC_011294:585500:591714591714592025312Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein5e-35145
NC_011147:2247460:225720922572092257517309Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-34144
NC_006511:2251022:226202522620252262333309Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-34144
NC_016832:2363136:237340323734032373711309Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-34143
NC_003198:598000:604191604191604502312Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-34143
NC_004631:2366335:237659923765992376910312Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-34143
NC_011094:593100:599285599285599593309Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein9e-34142