Pre_GI: BLASTP Hits

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Query: NC_011080:4703266:4723238 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4723238, End: 4723954, Length: 717

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:4716000:473882947388294739545717Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-126451
NC_010102:4745949:475822847582284758944717Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-126451
NC_011149:4677412:470954747095474710263717Salmonella enterica subsp. enterica serovar Agona str. SL483,conserved hypothetical protein TIGR010332e-126451
NC_011294:4560902:458139745813974582122726Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-126451
NC_011147:4460726:449046944904694491194726Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-126451
NC_006905:4638707:466151446615144662239726Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein2e-126451
NC_011274:4538722:455921545592154559940726Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein4e-126450
NC_004631:4687270:470089647008964701621726Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein7e-126449
AC_000091:2027648:205899520589952059711717Escherichia coli W3110 DNA, complete genomehypothetical protein2e-123441
NC_000913:2042935:205488220548822055598717Escherichia coli K12, complete genomehypothetical protein2e-123441
NC_010473:2119480:214589021458902146606717Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein2e-123441
NC_011601:2139188:214610321461032146819717Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-123441
NC_011745:2209288:223457222345722235288717Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-123441
NC_012759:1920955:194736519473651948081717Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-123441
NC_012947:1769438:177708717770871777803717Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-123441
NC_012967:1967675:199485719948571995573717Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-123441
NC_009800:2083465:209546120954612096177717Escherichia coli HS, complete genomeconserved hypothetical protein TIGR010334e-123440
NC_010468:1816359:185076718507671851483717Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF284e-123440
NC_016822:2201388:223545522354552236171717Shigella sonnei 53G, complete genomehypothetical protein1e-122438
NC_011205:4718239:473873547387354739439705Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-122437
NC_013716:1138441:116107011610701161786717Citrobacter rodentium ICC168, complete genomehypothetical protein3e-122437
NC_011740:1831845:184106418410641841780717Escherichia fergusonii ATCC 35469, complete genomehypothetical protein3e-122437
NC_013928:370893:370893370893371609717Streptococcus mutans NN2025, complete genomehypothetical protein3e-98357
NC_014171:521996:536704536704537423720Bacillus thuringiensis BMB171 chromosome, complete genomehypothetical protein4e-71267
NC_017208:516127:530509530509531228720Bacillus thuringiensis serovar chinensis CT-43 chromosome, completehypothetical protein8e-71266
NC_000964:732255:751749751749752468720Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein4e-70264
NC_006270:741731:764873764873765592720Bacillus licheniformis ATCC 14580, complete genomehypothetical protein4e-69261
NC_006322:741516:764633764633765376744Bacillus licheniformis ATCC 14580, complete genomehypothetical protein4e-69261
NC_019896:3311000:331102333110233311742720Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein3e-69261
NC_017195:709098:729932729932730651720Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completehypothetical protein3e-69261
NC_016023:1083826:110572011057201106439720Bacillus coagulans 36D1 chromosome, complete genomehypothetical protein2e-69261
NC_020244:747762:769661769661770380720Bacillus subtilis XF-1, complete genomeresponse regulator aspartate phosphatase7e-69260
NC_017188:635901:650145650145650864720Bacillus amyloliquefaciens TA208 chromosome, complete genomehypothetical protein1e-68259
NC_017190:678089:692333692333693052720Bacillus amyloliquefaciens LL3 chromosome, complete genomehypothetical protein1e-68259
NC_017191:641923:656167656167656886720Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein1e-68259
UCMB5137:276121:293108293108293827720Bacillus atrophaeus UCMB-5137hypothetical protein1e-68259
NC_009725:692237:712354712354713073720Bacillus amyloliquefaciens FZB42, complete genomeYeeI9e-69259
NC_019842:680000:702063702063702782720Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein9e-69259
NC_020272:3245834:325215232521523252871720Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein9e-69259
NC_014639:193080:215663215663216382720Bacillus atrophaeus 1942 chromosome, complete genomehypothetical protein2e-68258
CP002207:193080:215663215663216382720Bacillus atrophaeus 1942, complete genomehypothetical protein2e-68258
NC_014551:691594:706822706822707541720Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein3e-68258
NC_015690:3477573:3484879348487934862461368Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein4e-44177
NC_016935:4038265:4043583404358340449501368Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein3e-43175
NC_009348:3029963:306171030617103062450741Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein1e-38159
NC_009454:1042592:105629510562951057026732Pelotomaculum thermopropionicum SI, complete genomehypothetical protein2e-37155
NC_009483:1636189:165394316539431654686744Geobacter uraniireducens Rf4 chromosome, complete genomehypothetical protein9e-35147
NC_013416:1783349:178439917843991785139741Aggregatibacter actinomycetemcomitans D11S-1, complete genomedATP pyrophosphohydrolase5e-34144
NC_004129:5481629:550308955030895503835747Pseudomonas fluorescens Pf-5, complete genomehypothetical protein1e-33143
NC_014652:1898969:189896918989691899700732Caldicellulosiruptor hydrothermalis 108 chromosome, completehypothetical protein2e-33142
NC_014392:848195:870067870067870798732Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomehypothetical protein2e-33142
NC_013939:1688400:169266916926691693418750Deferribacter desulfuricans SSM1, complete genomehypothetical protein1e-33142
AP010958:2134556:213660221366022137342741Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein1e-32140
NC_013353:2134556:213660221366022137342741Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein1e-32140
CU928160:1978500:201132020113202012060741Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein7e-33140
NC_011741:1978500:201132020113202012060741Escherichia coli IAI1 chromosome, complete genomehypothetical protein7e-33140
NC_013361:2591829:262461726246172625357741Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein7e-33140
NC_013364:2355298:238808723880872388827741Escherichia coli O111:H- str. 11128, complete genomehypothetical protein7e-33140
NC_014657:742739:766234766234766965732Caldicellulosiruptor owensensis OL chromosome, complete genomehypothetical protein7e-33140
NC_014377:1335963:134144713414471342175729Thermosediminibacter oceani DSM 16646 chromosome, complete genomeprotein of unknown function DUF281e-32139
NC_015136:1141925:116698611669861167714729Burkholderia sp. CCGE1001 chromosome 1, complete sequencehypothetical protein2e-32139
NC_015873:1193843:119800611980061198740735Megasphaera elsdenii DSM 20460, complete genomeUPF0082 protein HMPREF0889_09633e-32138
NC_007633:696604:712560712560713273714Mycoplasma capricolum subsp. capricolum ATCC 27343, completeConserved hypothetical cytosolic protein4e-32138
NC_021182:2965395:298776329877632988500738Clostridium pasteurianum BC1, complete genomeDNA-binding regulatory protein, YebC/PmpR family8e-32137
NC_007759:723675:746242746242746994753Syntrophus aciditrophicus SB, complete genomehypothetical cytosolic protein5e-31134
NC_011898:189498:204453204453205199747Clostridium cellulolyticum H10, complete genomeprotein of unknown function DUF284e-31134
NC_008752:3511006:353160835316083532327720Acidovorax avenae subsp. citrulli AAC00-1, complete genomeprotein of unknown function DUF288e-31133
NC_013730:296312:302334302334303101768Spirosoma linguale DSM 74, complete genomeprotein of unknown function DUF285e-30131
NC_004547:2810151:281074428107442811487744Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein8e-30130
NC_016751:1700164:170457517045751705327753Marinitoga piezophila KA3 chromosome, complete genomeYebC/PmpR family DNA-binding regulatory protein4e-29128
NC_012108:442493:464807464807465550744Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein4e-29128
NC_009089:965959:965959965959966678720Clostridium difficile 630, complete genomehypothetical protein2e-28126
NC_013316:891782:893185893185893904720Clostridium difficile R20291, complete genomehypothetical protein2e-28126
NC_013315:895500:895570895570896289720Clostridium difficile CD196 chromosome, complete genomehypothetical protein2e-28126
NC_017179:905347:905347905347906066720Clostridium difficile BI1, complete genomehypothetical protein2e-28126
NC_014328:3682000:369929936992993700039741Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein1e-28126
NC_015731:402280:405714405714406439726Nitrosomonas sp. Is79A3 chromosome, complete genomehypothetical protein1e-27122
NC_015732:1507473:151416415141641514904741Spirochaeta caldaria DSM 7334 chromosome, complete genomehypothetical protein3e-27122
NC_015311:2689118:270840727084072709147741Prevotella denticola F0289 chromosome, complete genomeDNA-binding regulatory protein, YebC/PmpR family3e-27122
NC_008463:4566976:460048846004884601234747Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein3e-27121
NC_011770:4763506:478734347873434788089747Pseudomonas aeruginosa LESB58, complete genomehypothetical protein3e-27121
NC_002516:1031386:105030110503011051047747Pseudomonas aeruginosa PAO1, complete genomehypothetical protein3e-27121
NC_018080:4465618:448855844885584489304747Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein3e-27121
NC_014315:114151:134843134843135592750Nitrosococcus watsoni C-113 chromosome, complete genomehypothetical protein2e-26119
NC_007484:130896:150092150092150838747Nitrosococcus oceani ATCC 19707, complete genomeProtein of unknown function DUF282e-26119
NC_013174:1459730:146860014686001469358759Jonesia denitrificans DSM 20603, complete genomeprotein of unknown function DUF289e-26117
NC_012526:2317862:232120823212082321936729Deinococcus deserti VCD115, complete genomehypothetical protein1e-25116
NC_015222:386000:401731401731402456726Nitrosomonas sp. AL212 chromosome, complete genomehypothetical protein2e-25116
NC_015519:1205049:122482612248261225563738Tepidanaerobacter sp. Re1 chromosome, complete genomehypothetical protein3e-25115
NC_006156:17637:238222382224553732Borrelia garinii PBi chromosome linear, complete sequencehypothetical protein4e-25114
NC_019960:659756:672440672440673168729Prevotella dentalis DSM 3688 chromosome 1, complete sequenceDNA-binding regulatory protein, YebC/PmpR family4e-25114
NC_007798:547800:560830560830561567738Neorickettsia sennetsu str. Miyayama, complete genomeconserved hypothetical protein TIGR010333e-24112
NC_017095:1429298:143249914324991433257759Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeYebC/PmpR family DNA-binding regulatory protein4e-24111
NC_009523:5475812:548145954814595482226768Roseiflexus sp. RS-1 chromosome, complete genomehypothetical protein8e-24110
NC_013009:562470:575528575528576253726Neorickettsia risticii str. Illinois, complete genomehypothetical protein3e-23108
NC_016801:1361597:141271014127101413462753Corynebacterium diphtheriae C7 (beta) chromosome, complete genomehypothetical protein3e-23108
NC_015510:2907815:291107829110782911785708Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomehypothetical protein8e-23107
NC_013385:1617338:162013816201381620896759Ammonifex degensii KC4, complete genomeprotein of unknown function DUF282e-22106
NC_016800:1378728:139617413961741396926753Corynebacterium diphtheriae BH8 chromosome, complete genomehypothetical protein2e-22106
NC_016802:1317365:136850213685021369254753Corynebacterium diphtheriae HC02 chromosome, complete genomehypothetical protein2e-22106
NC_004757:230541:246049246049246774726Nitrosomonas europaea ATCC 19718, complete genomehypothetical protein1e-22106
NC_016783:1374464:139189013918901392642753Corynebacterium diphtheriae INCA 402 chromosome, complete genomehypothetical protein1e-22106
NC_016785:1321700:134919313491931349945753Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomehypothetical protein1e-22106
NC_016788:1349500:136629213662921367044753Corynebacterium diphtheriae HC04 chromosome, complete genomehypothetical protein1e-22106
NC_016799:1343020:142303314230331423785753Corynebacterium diphtheriae 31A chromosome, complete genomehypothetical protein1e-22106
NC_009718:1183816:120588212058821206640759Fervidobacterium nodosum Rt17-B1, complete genomehypothetical protein1e-22106
NC_019673:3253650:326408932640893264841753Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-22105
NC_002935:1378566:139536813953681396120753Corynebacterium diphtheriae NCTC 13129, complete genomehypothetical protein2e-22105
NC_016782:1359000:136971113697111370463753Corynebacterium diphtheriae 241 chromosome, complete genomehypothetical protein2e-22105
NC_016786:1359064:136968113696811370433753Corynebacterium diphtheriae HC01 chromosome, complete genomehypothetical protein2e-22105
NC_016787:1350676:136278813627881363540753Corynebacterium diphtheriae HC03 chromosome, complete genomehypothetical protein2e-22105
NC_016790:1319060:133885613388561339608753Corynebacterium diphtheriae VA01 chromosome, complete genomehypothetical protein2e-22105
NC_009616:979861:100533310053331006091759Thermosipho melanesiensis BI429 chromosome, complete genomehypothetical protein2e-21102
NC_011653:1226035:125251712525171253275759Thermosipho africanus TCF52B, complete genomehypothetical protein4e-21101
NC_017062:547317:568145568145568903759Rickettsia typhi str. B9991CWPP chromosome, complete genomehypothetical protein1e-20100
NC_002677:563500:576361576361577116756Mycobacterium leprae TN, complete genomehypothetical protein5e-2097.8
NC_011896:563641:576370576370577125756Mycobacterium leprae Br4923, complete genomehypothetical protein5e-2097.8
NC_009663:1656804:167791316779131678650738Sulfurovum sp. NBC37-1, complete genomehypothetical protein1e-1996.7
NC_006085:1234587:125828012582801259074795Propionibacterium acnes KPA171202, complete genomehypothetical protein2e-1995.9
NC_016516:1203000:122485912248591225653795Propionibacterium acnes TypeIA2 P.acn33 chromosome, completehypothetical protein4e-1994.7
NC_016512:1211653:123341312334131234207795Propionibacterium acnes TypeIA2 P.acn17 chromosome, completehypothetical protein4e-1994.7
NC_014039:1238500:126038912603891261183795Propionibacterium acnes SK137 chromosome, complete genomehypothetical protein4e-1994.7
NC_002162:333303:338652338652339362711Ureaplasma parvum serovar 3 str. ATCC 700970, complete genomehypothetical protein8e-1890.9
NC_008319:1950889:196578019657801966514735Synechococcus sp. CC9311, complete genomeconserved hypothetical protein TIGR010331e-1789.7
NC_005823:3487108:348864134886413489390750Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130hypothetical protein3e-1789
NC_007516:1947214:195306619530661953875810Synechococcus sp. CC9605, complete genomeProtein of unknown function DUF282e-1685.9
NC_002488:1812696:181269618126961813430735Xylella fastidiosa 9a5c, complete genomehypothetical protein4e-1685.1
NC_004556:1076063:109603110960311096765735Xylella fastidiosa Temecula1, complete genomehypothetical protein7e-1684.3
NC_010577:1087092:110591811059181106652735Xylella fastidiosa M23, complete genomeprotein of unknown function DUF287e-1684.3
NC_010513:1128000:114541611454161146150735Xylella fastidiosa M12 chromosome, complete genomehypothetical protein2e-1582.8