Pre_GI: BLASTP Hits

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Query: NC_011080:4703266:4722061 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4722061, End: 4722759, Length: 699

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:4560902:458020745802074580917711Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-136484
NC_011205:4718239:473754547375454738255711Salmonella enterica subsp. enterica serovar Dublin str. CT_020218531e-136484
NC_011149:4677412:470819447081944709069876Salmonella enterica subsp. enterica serovar Agona str. SL483,HNH nuclease9e-136482
NC_011147:4460726:448777644877764488651876Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-134478
NC_004631:4687270:469954046995404700415876Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein8e-134476
NC_006905:4638707:466016146601614661036876Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein1e-132471
NC_012125:4716000:473747647374764738351876Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-132471
CP002185:4750571:475615847561584757033876Escherichia coli W, complete genomehypothetical protein5e-125446
NC_020211:554736:564967564967565842876Serratia marcescens WW4, complete genomeHNH nuclease1e-124445
NC_009436:522649:545015545015545908894Enterobacter sp. 638, complete genomehypothetical protein1e-107389
NC_010498:4899167:490680749068074907679873Escherichia coli SMS-3-5, complete genomehypothetical protein2e-105382
NC_009801:4882684:489775948977594898631873Escherichia coli E24377A, complete genomehypothetical protein1e-105382
NC_009800:4529504:454053345405334541405873Escherichia coli HS, complete genomehypothetical protein4e-105380
NC_011750:4978000:498298549829854983914930Escherichia coli IAI39 chromosome, complete genomehypothetical protein5e-105380
NC_014121:677799:695610695610696479870Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein9e-105379
NC_007613:4403070:440931644093164410188873Shigella boydii Sb227, complete genomehypothetical protein1e-104379
NC_007946:4875997:490026349002634901168906Escherichia coli UTI89, complete genomehypothetical protein2e-104378
NC_008563:4905186:491649249164924917397906Escherichia coli APEC O1, complete genomehypothetical protein2e-104378
NC_011601:4856717:487357148735714874476906Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerestriction endonuclease2e-104378
NC_013364:5255700:526567852656785266550873Escherichia coli O111:H- str. 11128, complete genomeputative restriction endonuclease1e-104378
CP002516:4199133:421402542140254214897873Escherichia coli KO11, complete genomeputative restriction endonuclease5e-104377
CP002185:4791811:479797347979734798845873Escherichia coli W, complete genomeputative restriction endonuclease5e-104377
NC_016902:4199133:421402542140254214897873Escherichia coli KO11FL chromosome, complete genomeputative restriction endonuclease5e-104377
NC_008253:4817864:484076148407614841633873Escherichia coli 536, complete genomehypothetical protein4e-104377
NC_016816:3952000:395795439579543958823870Pantoea ananatis LMG 5342, complete genomeHNH nuclease4e-102370
NC_016514:506611:527739527739528614876Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein6e-102370
NC_011283:4966471:497394749739474974816870Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein1e-100365
NC_013850:4829455:483627748362774837146870Klebsiella variicola At-22 chromosome, complete genomehypothetical protein2e-100364
NC_016845:575123:598562598562599431870Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein8e-100362
NC_002655:5382557:538881053888105389694885Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-99361
NC_002695:5352554:535880753588075359658852Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-99361
NC_013941:5192500:519707251970725197956885Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein6e-99360
NC_011353:5426793:543245554324555433306852Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeHNH nuclease2e-98358
NC_013008:5382917:538851653885165389367852Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-98358
NC_013421:1819036:182912118291211829996876Pectobacterium wasabiae WPP163, complete genomehypothetical protein4e-82304
NC_012912:4167429:418072641807264181598873Dickeya zeae Ech1591, complete genomehypothetical protein7e-80296
NC_016818:4215836:423289242328924233764873Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative restriction endonuclease4e-71267
NC_014306:4376012:439702443970244397896873Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein4e-69261
NC_014012:2411096:241959224195922420461870Shewanella violacea DSS12, complete genomehypothetical protein6e-64243
NC_010067:3056774:307063430706343071506873Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-63241
NC_020418:116500:120817120817121689873Morganella morganii subsp. morganii KT, complete genomehypothetical protein7e-62236
NC_014019:2711500:272741227274122728302891Bacillus megaterium QM B1551 chromosome, complete genomehypothetical protein5e-45181
NC_008826:13393:315363153632432897Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencehypothetical protein2e-39162
NC_009921:3255833:326724432672443268158915Frankia sp. EAN1pec, complete genomerestriction endonuclease-like protein3e-27121
NC_020063:4127161:413034841303484131286939Enterobacteriaceae bacterium strain FGI 57, complete genomeputative restriction endonuclease7e-25114
NC_017955:343931:349712349712350611900Modestobacter marinus, complete genomehypothetical protein3e-21102
NC_019940:2997439:300386230038623004743882Thioflavicoccus mobilis 8321 chromosome, complete genomerestriction endonuclease1e-1996.7
NC_007498:357484:3726873726873738111125Pelobacter carbinolicus DSM 2380, complete genomepredicted restriction endonuclease4e-1478.2
NC_009937:4392108:440932444093244410223900Azorhizobium caulinodans ORS 571, complete genomehypothetical protein5e-1477.8
NC_014169:231210:238629238629239417789Bifidobacterium longum subsp. longum JDM301 chromosome, completerestriction endonuclease1e-1377
NC_017218:273503:280906280906281694789Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomehypothetical protein1e-1377
NC_008609:1027838:105322410532241054204981Pelobacter propionicus DSM 2379, complete genomeHNH nuclease2e-1376.3
NC_014638:183115:197199197199197990792Bifidobacterium bifidum PRL2010 chromosome, complete genometype II restriction-modification system restriction subunit5e-1374.7
NC_020156:1565500:158153715815371582511975Nonlabens dokdonensis DSW-6, complete genomeHNH endonuclease family protein1e-1273.6
NC_007517:1998342:201182620118262012278453Geobacter metallireducens GS-15, complete genome2e-1272.8
NC_002939:1480474:149317114931711494151981Geobacter sulfurreducens PCA, complete genomeHNH endonuclease family protein3e-1272
NC_012918:928903:977172977172978152981Geobacter sp. M21 chromosome, complete genomeHNH nuclease7e-1270.9
NC_014100:449541:462239462239463156918Caulobacter segnis ATCC 21756 chromosome, complete genomehypothetical protein2e-1169.7
NC_011979:3070110:307674330767433077720978Geobacter sp. FRC-32, complete genomeHNH endonuclease2e-1169.3
NC_014151:3611956:362318936231893624082894Cellulomonas flavigena DSM 20109 chromosome, complete genomehypothetical protein9e-1063.9
NC_008618:1526392:153285015328501533620771Bifidobacterium adolescentis ATCC 15703, complete genomepossible restriction endonuclease2e-0962.8
NC_010995:4460413:447291044729104473668759Cellvibrio japonicus Ueda107, complete genomehypothetical protein2e-0962.8
NC_016948:2129335:214040021404002140924525Mycobacterium intracellulare MOTT-64 chromosome, complete genomehypothetical protein2e-0962.4
NC_013922:3290356:329704432970443297685642Natrialba magadii ATCC 43099 chromosome, complete genomerestriction endonuclease-like protein6e-0961.2
NC_008800:575141:589409589409590173765Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein6e-0961.2
NC_015224:610807:622685622685623449765Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein7e-0960.8
NC_014729:1185294:122704112270411227994954Halogeometricum borinquense DSM 11551 chromosome, complete genomehypothetical protein1e-0860.5
NC_008529:1042220:105313110531311053916786Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completePredicted restriction endonuclease1e-0860.5
NC_008825:1258500:129129912912991292225927Methylibium petroleiphilum PM1, complete genomehypothetical protein1e-0860.1
NC_008826:170609:173764173764174690927Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencehypothetical protein1e-0860.1
NC_011891:4450031:446755944675594468506948Anaeromyxobacter dehalogenans 2CP-1, complete genomerestriction endonuclease-like protein1e-0859.7
NC_014830:1602198:161001616100161610855840Intrasporangium calvum DSM 43043 chromosome, complete genomehypothetical protein2e-0859.7
NC_018524:4235773:425573042557304256701972Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeHNH endonuclease family protein2e-0859.3
NC_009665:3869904:388223138822313883046816Shewanella baltica OS185 chromosome, complete genomehypothetical protein5e-0858.2
NC_011059:65414:693516935170124774Prosthecochloris aestuarii DSM 271, complete genomeputative restriction endonuclease5e-0857.8
NC_017322:1260526:127283612728361273747912Sinorhizobium meliloti BL225C chromosome, complete genomehypothetical protein3e-0755.8
NC_018581:2768743:282364528236452824526882Gordonia sp. KTR9 chromosome, complete genomeputative restriction endonuclease2e-0755.8
NC_007760:4055860:4069310406931040706981389Anaeromyxobacter dehalogenans 2CP-C, complete genomehypothetical protein2e-0755.8
NC_008825:3161146:316777031677703168696927Methylibium petroleiphilum PM1, complete genomehypothetical protein4e-0755.1
NC_014033:772754:784512784512785339828Prevotella ruminicola 23 chromosome, complete genomehypothetical protein6e-0754.3
NC_019792:2524130:2578703257870325799441242Natronobacterium gregoryi SP2 chromosome, complete genomeHNH endonuclease8e-0754.3
NC_011884:3099488:3117643311764331189171275Cyanothece sp. PCC 7425, complete genomeTPR repeat-containing protein1e-0653.1
NC_015136:2021799:202808020280802029048969Burkholderia sp. CCGE1001 chromosome 1, complete sequenceHNH nuclease2e-0652.8
NC_011144:1073944:108376110837611084681921Phenylobacterium zucineum HLK1, complete genomerestriction endonuclease2e-0652.4
NC_011992:3375929:340591434059143406894981Acidovorax ebreus TPSY, complete genomerestriction endonuclease-like protein3e-0652
NC_009953:1799416:180957418095741810446873Salinispora arenicola CNS-205 chromosome, complete genomeSRA-YDG domain-containing protein5e-0651.6
NC_015152:2831566:283478428347842835692909Spirochaeta sp. Buddy chromosome, complete genomerestriction endonuclease5e-0651.2
NC_012490:4425456:443253844325384433425888Rhodococcus erythropolis PR4, complete genomehypothetical protein7e-0650.8