Pre_GI: BLASTP Hits

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Query: NC_011080:4703266:4718625 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4718625, End: 4718948, Length: 324

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002695:301939:319221319221319544324Escherichia coli O157:H7 str. Sakai, complete genomeCnr-like protein2e-36150
NC_011740:448000:450850450850451170321Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein from phage origin8e-35145
NC_021066:5342127:535802453580245358344321Raoultella ornithinolytica B6, complete genomeDNA replication protein1e-34144
NC_003198:4676536:469187746918774692197321Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical P4 phage protein2e-34144
NC_011080:2870428:288575328857532886073321Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical P4 phage protein2e-36151
NC_006511:4465495:446780644678064468126321Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical P4 phage protein3e-35147
NC_004631:4661000:467476646747664675086321Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical P4 phage protein2e-34144
NC_013008:306953:324413324413324736324Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-36150
NC_010102:2862178:286531328653132865633321Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-36150
NC_020211:996497:101098110109811011316336Serratia marcescens WW4, complete genomehypothetical protein7e-1785.9
NC_013956:4326388:432666943266694327046378Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein9e-0648.9
NC_013941:338121:360195360195360518324Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-36150
NC_010498:4072681:408952840895284089848321Escherichia coli SMS-3-5, complete genomehypothetical protein2e-35147
NC_013508:2870954:288127128812712881606336Edwardsiella tarda EIB202, complete genomehypothetical protein1e-34144
NC_009778:567000:595168595168595509342Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1891.7
NC_020211:103371:103819103819104154336Serratia marcescens WW4, complete genomehypothetical protein2e-1684.3
NC_013956:3273340:327334032733403273663324Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein2e-23107
NC_012917:833721:836847836847837188342Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein1e-1685.1
NC_011353:305820:323101323101323424324Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-36150
NC_013508:3593000:360638036063803606700321Edwardsiella tarda EIB202, complete genomehypothetical protein1e-35147
NC_011147:4460726:446303644630364463356321Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-35147
NC_014306:4376012:440977844097784410101324Erwinia billingiae Eb661, complete genomehypothetical protein3e-30130
NC_012917:3684840:368842736884273688768342Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein1e-1685.5
NC_016810:2871689:289757428975742897894321Salmonella enterica subsp. enterica serovar Typhimurium strP4 bacteriophage protein2e-34144
NC_009436:3367194:338182933818293382149321Enterobacter sp. 638, complete genomeP4 phage protein1e-34145
NC_016857:2871689:289757428975742897894321Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74P4 phage protein2e-34144
NC_014121:677799:692388692388692708321Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeP4 phage protein5e-37152
NC_016845:575123:590812590812591132321Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,P4 phage protein1e-34144
NC_014306:4901390:493900449390044939327324Erwinia billingiae Eb661, complete genomePutative phage-related protein3e-31133
NC_007613:4217557:421990542199054220225321Shigella boydii Sb227, complete genomeputative protein encoded in prophage2e-35147
NC_010468:1130000:114903411490341149354321Escherichia coli ATCC 8739, complete genomeputative protein encoded in prophage2e-35147
NC_002655:301940:319222319222319545324Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded in prophage CP-933I2e-36150