Pre_GI: BLASTP Hits

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Query: NC_011080:4703266:4713641 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4713641, End: 4714678, Length: 1038

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014500:443874:4559874559874571261140Dickeya dadantii 3937 chromosome, complete genomehypothetical protein2e-164578
NC_020209:4312892:4318163431816343192121050Pseudomonas poae RE*1-1-14, complete genomehypothetical protein8e-49194
NC_014323:5051041:506245850624585063429972Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein3e-25116
NC_013521:2193203:220435722043572205268912Sanguibacter keddieii DSM 10542, complete genomehypothetical protein1e-1273.9
NC_014623:9038177:9041492904149290426851194Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehypothetical protein4e-1169.3
NC_009050:427000:435511435511436452942Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequencehypothetical protein4e-1065.9
NC_016584:954000:971492971492972409918Desulfosporosinus orientis DSM 765 chromosome, complete genomehypothetical protein3e-0963.2
NC_015633:1702000:172200917220091722929921Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein6e-0962
NC_017249:7917586:7920139792013979211731035Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-0860.5
NC_004463:2344128:2361010236101023620441035Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein2e-0860.5