Pre_GI: BLASTP Hits

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Query: NC_011080:4543000:4559897 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4559897, End: 4560148, Length: 252

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020064:3998715:404438340443834044820438Serratia marcescens FGI94, complete genomeEnterobacteria AfaD invasin protein2e-1064.7
NC_006511:2540500:255920525592052559669465Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC4e-0857
NC_011080:333121:350605350605351075471Salmonella enterica subsp. enterica serovar Newport str. SL254,putative fimbrial structural subunit4e-0857
NC_011094:334267:347040347040347510471Salmonella enterica subsp. enterica serovar Schwarzengrund strfimbrial structural subunit4e-0857
NC_004631:2615908:263447826344782634948471Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative fimbrial structural subunit4e-0857
NC_003198:331314:346165346165346635471Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative fimbrial structural subunit4e-0857
NC_003197:332086:346098346098346568471Salmonella typhimurium LT2, complete genomeputative fimbrial subunit4e-0857
NC_016810:329849:345576345576346046471Salmonella enterica subsp. enterica serovar Typhimurium strfimbrial structural subunit4e-0857
NC_016831:2667561:267783026778302678300471Salmonella enterica subsp. enterica serovar Gallinarum/pullorumfimbrial structural subunit4e-0857
NC_016832:2612809:263137826313782631848471Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Fimbrial structural subunit4e-0857
NC_016856:332771:346783346783347253471Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative fimbrial subunit4e-0857
NC_011294:311796:325633325633326103471Salmonella enterica subsp. enterica serovar Enteritidis strfimbrial structural subunit4e-0857
NC_011149:309556:327395327395327865471Salmonella enterica subsp. enterica serovar Agona str. SL483,putative fimbrial structural subunit4e-0857
NC_011205:329155:349718349718350188471Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853fimbrial structural subunit4e-0857
NC_017046:329847:345574345574346044471Salmonella enterica subsp. enterica serovar Typhimurium str. 798fimbrial structural subunit4e-0857
NC_016863:332060:346072346072346542471Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative fimbrial subunit4e-0857
NC_016860:332087:346099346099346569471Salmonella enterica subsp. enterica serovar Typhimurium strputative fimbrial structural protein4e-0857
NC_016857:329849:345576345576346046471Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative fimbrial structural subunit4e-0857
NC_012125:326909:340609340609341079471Salmonella enterica subsp. enterica serovar Paratyphi C strainfimbriae subunit5e-0856.6
NC_006905:326517:340740340740341210471Salmonella enterica subsp. enterica serovar Choleraesuis strputative fimbriae subunit5e-0856.6
NC_010102:2762304:277073627707362771206471Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-0856.2
NC_011294:4560902:457406145740614574513453Salmonella enterica subsp. enterica serovar Enteritidis strfimbrial adhesin subunit4e-0650.4
NC_011205:4718239:473139847313984731850453Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853fimbrial adhesin subunit4e-0650.4