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Query: NC_011080:4461851:4469654 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4469654, End: 4471042, Length: 1389

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:4396500:4404442440444244058301389Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0934
NC_016832:4288980:4296795429679542981831389Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein0929
NC_004631:4300457:4308272430827243096601389Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative integral membrane protein0929
NC_003198:4315807:4323622432362243250101389Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative integral membrane protein0929
NC_016831:4286000:4293965429396542953531389Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein0929
NC_011294:4327904:4335707433570743370951389Salmonella enterica subsp. enterica serovar Enteritidis strintegral membrane protein0929
NC_011274:4305812:4313615431361543150031389Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91integral membrane protein0927
NC_011205:4486142:4493945449394544953331389Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853methyl-accepting chemotaxis protein0925
NC_012125:4400636:4408438440843844098261389Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein0923
NC_006905:4405301:4413103441310344144911389Salmonella enterica subsp. enterica serovar Choleraesuis strputative methyl-accepting chemotaxis protein0923
NC_011147:4221000:4229093422909342304811389Salmonella enterica subsp. enterica serovar Paratyphi A strintegral membrane protein0922
NC_006511:4225455:4233406423340642347941389Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative integral membrane protein0922
NC_011083:4466634:4474437447443744758251389Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative integral membrane protein0920
NC_011149:4390315:4398116439811643995041389Salmonella enterica subsp. enterica serovar Agona str. SL483,putative integral membrane protein0920
NC_003197:4470683:4478486447848644798741389Salmonella typhimurium LT2, complete genomeputative methyl-accepting chemotaxis protein0917
NC_016810:4491975:4499778449977845011661389Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein0917
NC_016856:4482845:4492028449202844934161389Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative methyl-accepting chemotaxis protein0917
NC_016857:4491976:4499779449977945011671389Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative methyl-accepting chemotaxis protein0917
NC_016860:4575772:4583575458357545849631389Salmonella enterica subsp. enterica serovar Typhimurium strputative methyl-accepting chemotaxis protein0917
NC_016863:4431831:4439634443963444410221389Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative methyl-accepting chemotaxis protein0917
NC_017046:4490500:4498439449843944998271389Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein0917
NC_011094:4361238:4369040436904043704281389Salmonella enterica subsp. enterica serovar Schwarzengrund strintegral membrane protein0913
NC_015761:4098481:4106430410643041077071278Salmonella bongori NCTC 12419, complete genomeintegral membrane protein0699
NC_010067:3310336:3348521334852133499121392Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-172603
NC_012881:2405414:2422691242269124237731083Desulfovibrio salexigens DSM 2638, complete genomehypothetical protein3e-0757