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Query: NC_011080:4461851:4469025 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4469025, End: 4469657, Length: 633

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:4225455:423277742327774233409633Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein5e-98356
NC_011147:4221000:422846442284644229096633Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-98356
NC_016832:4288980:429616642961664296798633Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-97354
NC_004631:4300457:430764343076434308275633Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-97354
NC_003198:4315807:432299343229934323625633Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-97354
NC_010102:4396500:440381344038134404445633Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-97353
NC_011083:4466634:447380844738084474440633Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein3e-97353
NC_012125:4400636:440780944078094408441633Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-96352
NC_011205:4486142:449331644933164493948633Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-96352
NC_006905:4405301:441247444124744413106633Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane or exported1e-96352
NC_011274:4305812:431298643129864313618633Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-96351
NC_011294:4327904:433507843350784335710633Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-96351
NC_016831:4286000:429333642933364293968633Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-96351
NC_003197:4470683:447785744778574478489633Salmonella typhimurium LT2, complete genomehypothetical protein1e-95348
NC_016810:4491975:449914944991494499781633Salmonella enterica subsp. enterica serovar Typhimurium strtype I secretion-related protein1e-95348
NC_016856:4482845:449139944913994492031633Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-95348
NC_016857:4491976:449915044991504499782633Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein1e-95348
NC_016860:4575772:458294645829464583578633Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-95348
NC_016863:4431831:443900544390054439637633Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein1e-95348
NC_011149:4390315:439748743974874398119633Salmonella enterica subsp. enterica serovar Agona str. SL483,putative inner membrane or exported1e-95348
NC_011094:4361238:436841143684114369043633Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-95348
NC_015761:4098481:410569041056904106322633Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-74279
NC_010067:3310336:334990933499093350556648Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-62237