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Query: NC_011080:4461851:4463469 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4463469, End: 4463807, Length: 339

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011083:4466634:446825244682524468590339Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein4e-57219
NC_011147:4221000:422276042227604223098339Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein7e-57218
NC_006511:4225455:422707342270734227411339Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein7e-57218
NC_016831:4286000:428778042877804288118339Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein3e-56216
NC_011294:4327904:432952243295224329860339Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-56216
NC_011274:4305812:430743043074304307768339Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein3e-56216
NC_011205:4486142:448776044877604488098339Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853inner membrane protein3e-56216
NC_011149:4390315:439193343919334392271339Salmonella enterica subsp. enterica serovar Agona str. SL483,putative inner membrane protein8e-56215
NC_012125:4400636:440225444022544402592339Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-55214
NC_006905:4405301:440691944069194407257339Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein1e-55214
NC_003197:4470683:447230144723014472639339Salmonella typhimurium LT2, complete genomeputative inner membrane protein3e-55213
NC_016810:4491975:449359344935934493931339Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-55213
NC_016856:4482845:448584344858434486181339Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein3e-55213
NC_016857:4491976:449359444935944493932339Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein3e-55213
NC_016860:4575772:457739045773904577728339Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein3e-55213
NC_016863:4431831:443344944334494433787339Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein3e-55213
NC_017046:4490500:449225444922544492592339Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein3e-55213
NC_011094:4361238:436285643628564363194339Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-55213
NC_003198:4315807:431742543174254317763339Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-53207
NC_004631:4300457:430207543020754302413339Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-53207
NC_016832:4288980:429059842905984290936339Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-53207
NC_010102:4396500:439825743982574398565309Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-50195
NC_010067:3310336:335624233562423356580339Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-47187
NC_020181:3585898:361710736171073617424318Enterobacter aerogenes EA1509E, complete genomePutative inner membrane protein3e-1167