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Query: NC_011080:4177443:4198973 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4198973, End: 4199962, Length: 990

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010067:3538169:356401335640133565002990Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-180632
NC_009778:4014026:401402640140264015015990Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-171601
NC_020260:4029951:402995140299514030940990Cronobacter sakazakii Sp291, complete genomehypothetical protein2e-171601
NC_013282:4312791:433012943301294331070942Cronobacter turicensis, complete genomeUncharacterized protein yiiD3e-160564
NC_008800:36500:429144291443837924Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein7e-144510
NC_013892:202778:225514225514226431918Xenorhabdus bovienii SS-2004 chromosome, complete genomeacyltransferase2e-131469
NC_015497:375909:379306379306380232927Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomethioesterase domain protein4e-68258
NC_017506:1507943:152997315299731530458486Marinobacter adhaerens HP15 chromosome, complete genomethioesterase domain-containing protein7e-1065.1
NC_017033:3189282:320331432033143203799486Frateuria aurantia DSM 6220 chromosome, complete genomethioesterase-like protein8e-0858.2
NC_013406:2207520:222444922244492224892444Paenibacillus sp. Y412MC10 chromosome, complete genomeGCN5-like N-acetyltransferase2e-0653.9
NC_014622:3525017:353043135304313530877447Paenibacillus polymyxa SC2 chromosome, complete genomegcn5-like N-acetyltransferase3e-0653.1
NC_014650:2969866:299341229934122993846435Geobacillus sp. Y4.1MC1 chromosome, complete genomeGCN5-like N-acetyltransferase3e-0652.8
NC_014483:3235968:323990132399013240347447Paenibacillus polymyxa E681 chromosome, complete genomehypothetical protein4e-0652.8