Pre_GI: BLASTP Hits

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Query: NC_011080:4177443:4198539 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4198539, End: 4198976, Length: 438

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010067:3538169:356499935649993565436438Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-79292
NC_013282:4312791:433111543311154331552438Cronobacter turicensis, complete genomeD-tyrosyl-tRNA(Tyr) deacylase4e-67252
NC_009778:4014026:401359240135924014029438Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein8e-67251
NC_020260:4029951:402951740295174029954438Cronobacter sakazakii Sp291, complete genomeD-tyrosyl-tRNA(Tyr) deacylase8e-67251
NC_013892:202778:224963224963225400438Xenorhabdus bovienii SS-2004 chromosome, complete genomeD-Tyr-tRNA(Tyr) deacylase3e-60229
NC_008149:318860:319811319811320248438Yersinia pestis Nepal516, complete genomehypothetical protein7e-59225
NC_004088:4202247:421955042195504219987438Yersinia pestis KIM, complete genomeD-tyrosyl-tRNA deacylase7e-59225
NC_017265:4065625:408292840829284083365438Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,D-Tyr-tRNA(Tyr) deacylase7e-59225
NC_008800:36500:422254222542662438Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,D-tyrosyl-tRNA(Tyr) deacylase9e-54208
NC_015497:375909:378773378773379210438Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase2e-48190
NC_007645:1033834:104206510420651042505441Hahella chejuensis KCTC 2396, complete genomeD-tyrosyl-tRNA(Tyr) deacylase5e-42169
NC_015947:3991696:400718340071834007623441Burkholderia sp. JV3 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase3e-41167
NC_007086:4489153:450158045015804502020441Xanthomonas campestris pv. campestris str. 8004, complete genomeD-tyrosyl-tRNA deacylase2e-41167
NC_003902:4430621:444399744439974444437441Xanthomonas campestris pv. campestris str. ATCC 33913, completeD-tyrosyl-tRNA deacylase2e-41167
NC_011071:4000620:402604340260434026483441Stenotrophomonas maltophilia R551-3, complete genomeD-tyrosyl-tRNA(Tyr) deacylase6e-41166
NC_007508:4476726:449288344928834493323441Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeD-tyrosyl-tRNA deacylase8e-39158
NC_007484:755058:769982769982770449468Nitrosococcus oceani ATCC 19707, complete genomeD-tyrosyl-tRNA(Tyr) deacylase3e-38157
NC_013642:505518:529123529123529572450Thermotoga naphthophila RKU-10, complete genomeD-tyrosyl-tRNA(Tyr) deacylase4e-38156
NC_017033:276741:292384292384292827444Frateuria aurantia DSM 6220 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase2e-36150
NC_009718:1183816:118600611860061186455450Fervidobacterium nodosum Rt17-B1, complete genomeD-tyrosyl-tRNA(Tyr) deacylase8e-36148
NC_008148:2290806:230501223050122305452441Rubrobacter xylanophilus DSM 9941, complete genomeD-tyrosyl-tRNA(Tyr) deacylase1e-35148
NC_015572:3091707:312807131280713128511441Methylomonas methanica MC09 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase1e-35148
NC_010730:346287:372434372434372877444Sulfurihydrogenibium sp. YO3AOP1, complete genomeD-tyrosyl-tRNA(Tyr) deacylase3e-35147
NC_007644:1694879:171617317161731716622450Moorella thermoacetica ATCC 39073, complete genomeD-tyrosyl-tRNA(Tyr) deacylase1e-33141
NC_010655:1160384:116714911671491167601453Akkermansia muciniphila ATCC BAA-835, complete genomeD-tyrosyl-tRNA(Tyr) deacylase2e-33140
NC_018664:1795223:180749518074951807950456Clostridium acidurici 9a chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase Dtd6e-33139
NC_004722:4333643:433989543398954340335441Bacillus cereus ATCC 14579, complete genomeD-tyrosyl-tRNA deacylase2e-32137
NC_008021:1634912:163895216389521639395444Streptococcus pyogenes MGAS9429, complete genomeD-tyrosyl-tRNA(Tyr) deacylase2e-32137
NC_007297:1639954:164575516457551646198444Streptococcus pyogenes MGAS5005, complete genomeD-tyrosyl-tRNA deacylase4e-32136
NC_008024:1725442:173122417312241731667444Streptococcus pyogenes MGAS10750, complete genomeD-tyrosyl-tRNA(Tyr) deacylase4e-32136
NC_002737:1644602:164866116486611649104444Streptococcus pyogenes M1 GAS, complete genomeD-tyrosyl-tRNA deacylase4e-32136
NC_007296:1669995:167577616757761676219444Streptococcus pyogenes MGAS6180, complete genomeD-tyrosyl-tRNA deacylase4e-32136
NC_008022:1698431:170244617024461702889444Streptococcus pyogenes MGAS10270, complete genomeD-tyrosyl-tRNA(Tyr) deacylase4e-32136
NC_009332:1638763:164018216401821640625444Streptococcus pyogenes str. Manfredo chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase4e-32136
NC_011661:998562:998095998095998565471Dictyoglomus turgidum DSM 6724, complete genomeD-tyrosyl-tRNA(Tyr) deacylase4e-32136
NC_011375:1607656:161343716134371613880444Streptococcus pyogenes NZ131 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase4e-32136
NC_017040:1524198:152997915299791530422444Streptococcus pyogenes MGAS15252 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase protein Dtd3e-32136
NC_011725:4373721:438313043831304383570441Bacillus cereus B4264 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase7e-32135
NC_009767:2866668:287162928716292872102474Roseiflexus castenholzii DSM 13941, complete genomeD-tyrosyl-tRNA(Tyr) deacylase1e-31134
NC_016627:3205333:323944132394413239890450Clostridium clariflavum DSM 19732 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase7e-31132
NC_015681:1685672:170312117031211703570450Thermodesulfatator indicus DSM 15286 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase1e-30131
NC_013894:1380564:140281914028191403253435Thermocrinis albus DSM 14484 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase2e-30130
NC_015164:2777008:279390827939082794360453Bacteroides salanitronis DSM 18170 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase3e-30130
NC_009785:1895679:189837318983731898828456Streptococcus gordonii str. Challis substr. CH1, complete genomeD-tyrosyl-tRNA(Tyr) deacylase1e-29128
NC_010003:2134878:214061421406142141066453Petrotoga mobilis SJ95, complete genomeD-tyrosyl-tRNA(Tyr) deacylase9e-30128
NC_014328:3682000:368303636830363683485450Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative D-tyrosyl-tRNA deacylase9e-30128
NC_011835:965977:970603970603971082480Bifidobacterium animalis subsp. lactis AD011 chromosome, completeD-tyrosyl-tRNA(Tyr) deacylase2e-28124
NC_017214:54558:592985929859777480Bifidobacterium animalis subsp. lactis BB-12 chromosome, completeD-tyrosyl-tRNA(Tyr) deacylase2e-28124
NC_017215:1361822:136656213665621367041480Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,Hydrolase acting on ester bonds2e-28124
NC_017216:1356930:136155613615561362035480Bifidobacterium animalis subsp. lactis BLC1, complete genomeD-tyrosyl-tRNA(Tyr) deacylase2e-28124
NC_016024:1185388:119933311993331199830498Candidatus Chloracidobacterium thermophilum B chromosome chromosomeD-tyrosyl-tRNA(Tyr) deacylase2e-28124
NC_017217:1362573:136721113672111367678468Bifidobacterium animalis subsp. lactis V9 chromosome, completeD-tyrosyl-tRNA deacylase4e-28123
NC_012815:1357003:136164113616411362108468Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeD-tyrosyl-tRNA deacylase4e-28123
NC_012814:1357070:136170813617081362175468Bifidobacterium animalis subsp. lactis Bl-04, complete genomeD-tyrosyl-tRNA deacylase4e-28123
NC_013939:1417750:143693414369341437374441Deferribacter desulfuricans SSM1, complete genomeD-tyrosyl-tRNA(Tyr) deacylase4e-28123
NC_012881:3727150:374221837422183742685468Desulfovibrio salexigens DSM 2638, complete genomeD-tyrosyl-tRNA(Tyr) deacylase1e-27121
NC_005085:1269787:131651113165111316963453Chromobacterium violaceum ATCC 12472, complete genomeD-tyrosyl-tRNA deacylase8e-27119
NC_010729:2147268:216396121639612164413453Porphyromonas gingivalis ATCC 33277, complete genomeputative D-tyrosyl-tRNA deacylase1e-26118
NC_002950:2068500:208526720852672085719453Porphyromonas gingivalis W83, complete genomeD-tyrosyl-tRNA deacylase1e-26118
NC_011565:1054414:106198810619881062440453Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,D-tyrosyl-tRNA deacylase2e-26117
NC_007519:1782067:178155817815581782070513Desulfovibrio alaskensis G20 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase2e-26117
NC_015571:260664:276348276348276800453Porphyromonas gingivalis TDC60, complete genomeD-tyrosyl-tRNA(Tyr) deacylase2e-26117
NC_014934:2482934:250357325035732504025453Cellulophaga algicola DSM 14237 chromosome, complete genomed-tyrosyl-tRNA(tyr) deacylase5e-26116
NC_015499:1167932:119047811904781190927450Thermodesulfobium narugense DSM 14796 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase7e-25112
NC_014218:253558:268661268661269125465Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase3e-24110
NC_016111:2651500:267125526712552671680426Streptomyces cattleya NRRL 8057, complete genomeD-Tyr-tRNATyr deacylase1e-23108
NC_018681:1021063:104398410439841044427444Nocardia brasiliensis ATCC 700358 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase5e-23106
NC_009380:1663545:167742516774251677847423Salinispora tropica CNB-440 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase7e-2095.9
NC_012803:1373500:138649013864901386942453Micrococcus luteus NCTC 2665, complete genomeD-tyrosyl-tRNA(Tyr) deacylase8e-2095.5
NC_016786:1359064:141820714182071418644438Corynebacterium diphtheriae HC01 chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase6e-1889.7
NC_016785:1357500:139609413960941396531438Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase6e-1889.7
NC_016782:1385800:141794214179421418379438Corynebacterium diphtheriae 241 chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase6e-1889.7
NC_016800:1411000:144608314460831446520438Corynebacterium diphtheriae BH8 chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase3e-1787.4
NC_016789:1432000:146344614634461463883438Corynebacterium diphtheriae PW8 chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase3e-1787.4
NC_016783:1397975:143853414385341438971438Corynebacterium diphtheriae INCA 402 chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase3e-1787.4
NC_016799:1439000:146975214697521470189438Corynebacterium diphtheriae 31A chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase3e-1787
NC_016801:1422500:145973614597361460173438Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase3e-1787
NC_016802:1317365:140273314027331403170438Corynebacterium diphtheriae HC02 chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase3e-1787
NC_002935:1378566:142960014296001430037438Corynebacterium diphtheriae NCTC 13129, complete genomeD-tyrosyl-tRNA deacylase4e-1786.7
NC_014484:1163576:119523211952321195624393Spirochaeta thermophila DSM 6192 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase5e-1786.3
NC_016790:1345638:138558713855871386024438Corynebacterium diphtheriae VA01 chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase7e-1785.9
NC_016787:1350676:140952014095201409957438Corynebacterium diphtheriae HC03 chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase7e-1785.9
NC_016788:1376000:141302114130211413422402Corynebacterium diphtheriae HC04 chromosome, complete genomeD-tyrosyl-tRNA Tyr deacylase2e-1477.8
NC_016932:1309644:131182913118291312263435Corynebacterium pseudotuberculosis 316 chromosome, complete genomeD-tyrosyl-tRNA(Tyr) deacylase5e-1476.3
NC_008618:1206157:121159212115921212065474Bifidobacterium adolescentis ATCC 15703, complete genomeD-tyrosyl-tRNA(Tyr) deacylase5e-1476.3
NC_008699:4443000:446852444685244468940417Nocardioides sp. JS614, complete genomeD-tyrosyl-tRNA(Tyr) deacylase2e-1270.9
NC_013714:1521404:152588515258851526352468Bifidobacterium dentium Bd1, complete genomeD-tyrosyl-tRNA(Tyr) deacylase6e-0959.7