Pre_GI: BLASTP Hits

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Query: NC_011080:4177443:4197077 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4197077, End: 4197676, Length: 600

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016609:7565483:758021775802177580828612Niastella koreensis GR20-10 chromosome, complete genomeHAD-superfamily hydrolase1e-1169.7
NC_013410:2691437:271165027116502712309660Fibrobacter succinogenes subsp. succinogenes S85 chromosome,HAD-superfamily hydrolase6e-0753.9
NC_015436:202384:202384202384203016633Spirochaeta coccoides DSM 17374 chromosome, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 31e-0653.1
NC_013132:782846:786635786635787249615Chitinophaga pinensis DSM 2588, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 32e-1582.4
NC_019904:3127945:313029731302973130929633Echinicola vietnamensis DSM 17526 chromosome, complete genomehaloacid dehalogenase superfamily protein6e-1270.5
NC_016633:1130705:114763311476331148517885Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomehaloacid dehalogenase superfamily protein7e-0960.5
NC_010067:3538169:356629935662993566898600Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-106383
NC_004088:4202247:422097542209754221565591Yersinia pestis KIM, complete genomephosphatase2e-72271
NC_017265:4065625:408435340843534084943591Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,phosphatase2e-72271
NC_008800:36500:406484064841235588Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,phosphatase2e-73274
NC_013282:4312791:433241243324124333011600Cronobacter turicensis, complete genomePhosphatase yihX4e-82303
NC_013892:202778:224222224222224881660Xenorhabdus bovienii SS-2004 chromosome, complete genomephosphatase-like domain-containing protein3e-66251
NC_005363:2172444:218416721841672184772606Bdellovibrio bacteriovorus HD100, complete genomeputative haloacid dehalogenase-like hydrolase9e-0753.5