Pre_GI: BLASTP Hits

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Query: NC_011080:4177443:4191934 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4191934, End: 4193175, Length: 1242

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014816:2446236:2487909248790924890691161Asticcacaulis excentricus CB 48 chromosome 1, complete sequencemannose-6-phosphate isomerase1e-0964.3
NC_016023:1658377:1675426167542616766281203Bacillus coagulans 36D1 chromosome, complete genomeN-acylglucosamine 2-epimerase3e-34146
NC_017218:867550:8784818784818797161236Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeN-acylglucosamine 2-epimerase1e-79297
NC_010175:1531212:1540026154002615411951170Chloroflexus aurantiacus J-10-fl, complete genomeN-acylglucosamine 2-epimerase6e-0652.4
NC_015675:3046852:3063895306389530662192325Mesorhizobium opportunistum WSM2075 chromosome, complete genomemannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase7e-1168.9
NC_008228:372520:3867703867703879901221Pseudoalteromonas atlantica T6c, complete genomeN-acylglucosamine 2-epimerase3e-37156
NC_015703:5272193:5295151529515152963231173Runella slithyformis DSM 19594 chromosome, complete genomeN-acylglucosamine 2-epimerase1e-1170.9
NC_009380:3734773:3739027373902737403041278Salinispora tropica CNB-440 chromosome, complete genomeN-acylglucosamine 2-epimerase3e-92339
NC_008700:672326:6954656954656966341170Shewanella amazonensis SB2B, complete genomeconserved hypothetical protein7e-25115
NC_008322:4000330:4013045401304540142141170Shewanella sp. MR-7, complete genomeN-acylglucosamine 2-epimerase5e-31135
NC_016815:844350:8476738476738499822310Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequencephosphomannose isomerase1e-1377.8
NC_013722:3117442:3137356313735631386421287Xanthomonas albilineans, complete genomeputative glycoside transferase protein4e-33142
NC_014041:3715000:3746397374639737476021206Zunongwangia profunda SM-A87 chromosome, complete genomeN-acylglucosamine 2-epimerase4e-1169.3