Pre_GI: BLASTP Hits

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Query: NC_011080:4177443:4187836 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4187836, End: 4189872, Length: 2037

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021182:966839:9801839801839821862004Clostridium pasteurianum BC1, complete genomefamily 31 glycosyl hydrolase, alpha-glucosidase0850
NC_011978:1500663:1511403151140315133221920Thermotoga neapolitana DSM 4359, complete genomeAlpha-glucosidase9e-123441
NC_015953:5908467:5908467590846759107192253Streptomyces sp. SirexAA-E chromosome, complete genomeglycoside hydrolase family protein7e-47189
NC_015588:2468207:2487730248773024900302301Isoptericola variabilis 225 chromosome, complete genomeglycoside hydrolase family 316e-46186
NC_014652:757381:7648407648407671672328Caldicellulosiruptor hydrothermalis 108 chromosome, completeglycoside hydrolase family 312e-44181
NC_015434:4640769:4660642466064246628732232Verrucosispora maris AB-18-032 chromosome, complete genomeputative alpha-glucosidase4e-44179
NC_015732:773143:8099148099148124152502Spirochaeta caldaria DSM 7334 chromosome, complete genomeglycoside hydrolase family 315e-44179
NC_020291:5752099:5772800577280057751512352Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomealpha-glucosidase, family 31 of glycosyl hydrolase1e-43178
NC_012669:1493774:1501715150171515039972283Beutenbergia cavernae DSM 12333, complete genomeglycoside hydrolase family 312e-43177
NC_017295:1228760:1249930124993012522392310Clostridium acetobutylicum EA 2018 chromosome, complete genomealpha-xylosidase4e-43176
NC_015687:1230948:1252118125211812544272310Clostridium acetobutylicum DSM 1731 chromosome, complete genomealpha-xylosidase YicI4e-43176
NC_003030:1231127:1252297125229712546062310Clostridium acetobutylicum ATCC 824, complete genomeAlpha-glucosidase4e-43176
NC_016582:11878078:1188118211881182118834642283Streptomyces bingchenggensis BCW-1 chromosome, complete genomealpha-xylosidase5e-43176
NC_019897:1577015:1579576157957615818972322Thermobacillus composti KWC4 chromosome, complete genomealpha-glucosidase8e-43176
NC_007333:1743890:1866812186681218691092298Thermobifida fusca YX, complete genomeputative alpha-glucosidase3e-42174
NC_017079:700524:7077037077037100662364Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomeputative glycoside hydrolase8e-42172
NC_014246:1787154:1799630179963018019872358Mobiluncus curtisii ATCC 43063 chromosome, complete genomealpha-xylosidase YicI1e-39164
NC_004663:3910956:3913435391343539159392505Bacteroides thetaiotaomicron VPI-5482, complete genomealpha-glucosidase II2e-39164
NC_011898:2951670:2966986296698629692982313Clostridium cellulolyticum H10, complete genomeglycoside hydrolase family 311e-38162
NC_020291:4502467:4513219451321945155942376Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomefamily 31 glycosyl hydrolase, alpha-glucosidase3e-38160
NC_015968:74124:8861588615909332319Enterobacter asburiae LF7a chromosome, complete genomeglycoside hydrolase family protein3e-37157
NC_011601:4096427:4098275409827541005932319Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomealpha-xylosidase2e-37157
NC_016902:44744:6498064980672982319Escherichia coli KO11FL chromosome, complete genomeglycoside hydrolase family protein6e-37156
CP002516:44744:6498064980672982319Escherichia coli KO11, complete genomeglycoside hydrolase family 316e-37156
CP002185:4035502:4038775403877540410932319Escherichia coli W, complete genomepredicted alpha-glucosidase6e-37156
NC_004337:3590323:3802400380240038047182319Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-36155
NC_008253:3941938:3943786394378639461042319Escherichia coli 536, complete genomeputative family 31 glucosidase YicI7e-37155
NC_012967:3769499:3771261377126137735792319Escherichia coli B str. REL606 chromosome, complete genomealpha-xylosidase YicI7e-37155
NC_013361:4959323:4968354496835449706722319Escherichia coli O26:H11 str. 11368 chromosome, complete genomealpha-xylosidase7e-37155
NC_010468:49074:5723657236595542319Escherichia coli ATCC 8739, complete genomeglycoside hydrolase family 317e-37155
NC_004431:4270305:4270305427030542726232319Escherichia coli CFT073, complete genomePutative family 31 glucosidase yicI7e-37155
NC_010498:4072681:4077337407733740796552319Escherichia coli SMS-3-5, complete genomealpha-xylosidase7e-37155
NC_016863:3905875:3905875390587539081932319Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1alpha-xylosidase2e-36154
NC_016860:3964000:3967472396747239697902319Salmonella enterica subsp. enterica serovar Typhimurium stralpha-xylosidase2e-36154
NC_009614:3714770:3721756372175637240022247Bacteroides vulgatus ATCC 8482 chromosome, complete genomealpha-glycosidase1e-35152
NC_015663:1356982:1359316135931613616342319Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative alpha-glucosidase2e-35151
NC_016832:3858815:3876522387652238788402319Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Alpha-xylosidase3e-35150
NC_003198:3881221:3902226390222639045442319Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative glycosyl hydrolase3e-35150
NC_013716:4306695:4385972438597243882902319Citrobacter rodentium ICC168, complete genomeputative glycosyl hydrolase7e-35149
NC_011149:3863913:3863913386391338662312319Salmonella enterica subsp. enterica serovar Agona str. SL483,alpha-xylosidase1e-34148
NC_015697:33665:4145841458437642307Lactobacillus reuteri SD2112 chromosome, complete genomealpha-glucosidase8e-34145
NC_015177:4478986:4485680448568044881362457Pedobacter saltans DSM 12145 chromosome, complete genomeglycoside hydrolase family 311e-33144
NC_013859:421500:4227344227344252442511Azospirillum sp. B510 plasmid pAB510e, complete sequencealpha-glucosidase7e-33142
NC_005362:1796696:1810227181022718125332307Lactobacillus johnsonii NCC 533, complete genomealpha-glucosidase1e-32141
NC_009513:1065704:1068680106868010709862307Lactobacillus reuteri F275, complete genomeAlpha-glucosidase4e-32140
NC_009617:3360990:3375520337552033775472028Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeglycoside hydrolase6e-31136
NC_013205:2922343:2926031292603129283702340Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,Alpha-glucosidase3e-30134
NC_017167:3013947:3017284301728430196232340Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1Alpha-glucosidase4e-30133
NC_014652:757381:7624387624387644502013Caldicellulosiruptor hydrothermalis 108 chromosome, completeglycoside hydrolase family 312e-29131
NC_020291:1045058:1054815105481510568422028Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomealpha-glucosidase, family 31 of glycosyl hydrolase5e-29130
NC_012483:996555:1019237101923710216842448Acidobacterium capsulatum ATCC 51196, complete genomealpha-xylosidase5e-29130
NC_014650:2097900:2107138210713821095372400Geobacillus sp. Y4.1MC1 chromosome, complete genomeglycoside hydrolase family protein4e-29130
NC_010102:25893:4271742717447562040Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-29130
NC_003366:2356148:2379557237955723817972241Clostridium perfringens str. 13, complete genomealpha-glucosidase1e-28129
NC_015387:1803938:1819032181903218212992268Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeAlpha-glucosidase2e-28127
NC_014323:4665610:4706347470634747087582412Herbaspirillum seropedicae SmR1 chromosome, complete genomeglucosidase3e-28127
NC_018720:2039000:2041362204136220434312070Bifidobacterium asteroides PRL2011 chromosome, complete genomeglycosyl hydrolase, family 316e-28126
NC_014829:4088494:4099310409931041016882379Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeAlpha-glucosidase5e-28126
NC_008800:3642679:3671378367137836737532376Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative glucosidase8e-28125
NC_015224:1067390:1067390106739010697652376Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative glucosidase1e-27125
NC_016631:4530000:4561989456198945644512463Granulicella mallensis MP5ACTX8 chromosome, complete genomeglycoside hydrolase family protein1e-27125
NC_013416:1429881:1437164143716414395392376Aggregatibacter actinomycetemcomitans D11S-1, complete genomehypothetical protein2e-27124
NC_016513:1761830:1771453177145317736482196Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completealpha-glucosidase3e-27124
NC_018720:1186058:1203380120338012058782499Bifidobacterium asteroides PRL2011 chromosome, complete genomealpha-glucosidase6e-27122
NC_016582:11820671:1182725711827257118292361980Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative glycosyl hydrolase3e-26120
NC_011899:1021672:1021672102167210241942523Halothermothrix orenii H 168, complete genomeglycoside hydrolase family 311e-25119
NC_011899:355638:3774243774243804983075Halothermothrix orenii H 168, complete genomeglycoside hydrolase family 311e-25118
NC_014364:3500041:3502950350295035049532004Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeglycoside hydrolase family 313e-25117
NC_012967:3769499:3781336378133637837232388Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein9e-25115
NC_012947:44512:6071460714630952382Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeglucan 1,3-alpha-glucosidase9e-25115
NC_004431:4270305:4280984428098442827681785Escherichia coli CFT073, complete genomePutative glucosidase8e-25115
NC_013521:302574:3113203113203133922073Sanguibacter keddieii DSM 10542, complete genomefamily 31 glycosyl hydrolase, alpha-glucosidase2e-24114
NC_015566:4049000:4065102406510240674682367Serratia sp. AS12 chromosome, complete genomeglucan 1,3-alpha-glucosidase3e-24114
NC_020064:3517500:3536248353624835386112364Serratia marcescens FGI94, complete genomefamily 31 glycosyl hydrolase, alpha-glucosidase2e-23111
NC_013744:252702:2697942697942723312538Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeAlpha-glucosidase2e-23111
NC_011898:1218500:1246895124689512492702376Clostridium cellulolyticum H10, complete genomeglycoside hydrolase family 314e-23110
NC_014532:110875:1108751108751132442370Halomonas elongata DSM 2581, complete genomeputative glucosidase4e-23110
NC_014751:225477:2352092352092374762268Mycoplasma leachii PG50 chromosome, complete genomeglycosyl hydrolase, family 316e-23109
NC_012726:2143670:2160124216012421623162193Sulfolobus islandicus M.16.4 chromosome, complete genomeAlpha-glucosidase8e-23109
NC_017275:2176000:2185618218561821878102193Sulfolobus islandicus HVE10/4 chromosome, complete genomeAlpha-glucosidase8e-23109
NC_012589:2275276:2285575228557522877672193Sulfolobus islandicus L.S.2.15, complete genomeAlpha-glucosidase8e-23109
NC_017276:2053790:2063746206374620659382193Sulfolobus islandicus REY15A chromosome, complete genomealpha-glucosidase9e-23109
NC_015164:1812439:1812659181265918150672409Bacteroides salanitronis DSM 18170 chromosome, complete genomeglycoside hydrolase family 313e-22107
NC_018607:921923:9219239219239243192397Brachyspira pilosicoli B2904 chromosome, complete genomeglycoside hydrolase2e-22107
NC_012623:390402:3948333948333970252193Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeAlpha-glucosidase6e-22106
NC_012622:2211631:2223848222384822260402193Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeAlpha-glucosidase6e-22106
NC_004663:4729452:4742081474208147445552475Bacteroides thetaiotaomicron VPI-5482, complete genomealpha-xylosidase9e-22105
NC_002754:2764032:2769914276991427721092196Sulfolobus solfataricus P2, complete genomeAlpha-xylosidase (xylS)2e-21104
NC_008536:9538891:9538891953889195411612271Solibacter usitatus Ellin6076, complete genomeglycoside hydrolase, family 312e-21104
NC_010424:14657:1764917649200992451Candidatus Desulforudis audaxviator MP104C, complete genomeAlpha-glucosidase3e-20100
NC_005125:182701:1866071866071889372331Gloeobacter violaceus PCC 7421, complete genomealpha-glucosidase2e-1998.2
NC_015957:5310000:5314902531490253170342133Streptomyces violaceusniger Tu 4113 chromosome, complete genomeglycoside hydrolase family protein6e-1583.2
NC_019968:891904:8919048919048943842481Prevotella dentalis DSM 3688 chromosome 2, complete sequencefamily 31 glycosyl hydrolase, alpha-glucosidase2e-1378.2
NC_013714:2477638:2500207250020725027682562Bifidobacterium dentium Bd1, complete genomeAglL Glycosyl hydrolases family 31, Alpha-glucosidase2e-1275.1
NC_014371:1328500:1331139133113913349333795Prevotella melaninogenica ATCC 25845 chromosome chromosome II,F5/8 type C domain protein5e-1066.6
NC_004663:3910956:3910956391095639130942139Bacteroides thetaiotaomicron VPI-5482, complete genomealpha-xylosidase1e-0965.5
NC_018720:176306:2086152086152111162502Bifidobacterium asteroides PRL2011 chromosome, complete genomealpha-glucosidase, family 31 of glycosyl hydrolases2e-0965.1
NC_016776:625628:6330196330196352562238Bacteroides fragilis 638R, complete genomeputative glycosyl hydrolase, alpha-xylosidase9e-0962.8
NC_006347:625328:6295566295566317932238Bacteroides fragilis YCH46, complete genomealpha-xylosidase9e-0962.8
NC_010943:4527366:4543580454358045469093330Stenotrophomonas maltophilia K279a, complete genomeputative glycosyl hydrolase3e-0861.2
NC_015947:4248536:4269110426911042724693360Burkholderia sp. JV3 chromosome, complete genomeglycoside hydrolase family protein4e-0860.8