Pre_GI: BLASTP Hits

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Query: NC_011080:4177443:4186408 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4186408, End: 4187790, Length: 1383

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011080:4177443:4184944418494441863621419Salmonella enterica subsp. enterica serovar Newport str. SL254,sugar (Glycoside-Pentoside-Hexuronide) transporter5e-172604
NC_018265:75658:7978179781812111431Melissococcus plutonius DAT561 plasmid 1, complete sequencesugar (glycoside-pentoside-hexuronide) transporter4e-72272
NC_020272:2077795:2104049210404921054401392Bacillus amyloliquefaciens IT-45, complete genomeMelibiose carrier protein Thiomethylgalactoside permease II9e-57221
NC_019842:1847081:1856383185638318577741392Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein2e-55216
NC_009725:1787262:1796850179685017982411392Bacillus amyloliquefaciens FZB42, complete genomeXynP3e-55216
NC_020244:1875834:1893234189323418946251392Bacillus subtilis XF-1, complete genomeH+-symporter7e-55215
NC_020410:1781884:1794239179423917956301392Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative H+-xyloside symporter3e-54213
NC_017188:1567000:1597427159742715988181392Bacillus amyloliquefaciens TA208 chromosome, complete genomeputative H+-xyloside symporter2e-54213
NC_017195:1852935:1868535186853518699261392Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completehypothetical protein4e-54212
NC_000964:1873398:1886560188656018879511392Bacillus subtilis subsp. subtilis str. 168, complete genomeH+-symporter5e-54212
NC_014479:1831404:1841137184113718425281392Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative H+-xyloside symporter6e-54212
NC_019896:2158223:2180916218091621823071392Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completesymporter YnaJ1e-53211
NC_016047:1978312:1987662198766219890531392Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completehypothetical protein2e-53210
NC_014976:1:1334513345147361392Bacillus subtilis BSn5 chromosome, complete genomeputative H+-xyloside symporter1e-53210
NC_016776:998657:99984699984610012341389Bacteroides fragilis 638R, complete genomeputative cation symporter5e-52205
NC_003228:945266:9464559464559478431389Bacteroides fragilis NCTC 9343, complete genomeputative cation symporter5e-52205
NC_006347:1006020:1007209100720910085971389Bacteroides fragilis YCH46, complete genomecation symporter1e-51204
NC_012779:3316877:3315516331551633168801365Edwardsiella ictaluri 93-146, complete genomeglucuronide carrier protein5e-46185
NC_012967:3769499:3773589377358937749711383Escherichia coli B str. REL606 chromosome, complete genomeputative transporter2e-44180
NC_010102:25893:4479644796462111416Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-44179
NC_014551:605855:6275006275006288791380Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein3e-44179
NC_010498:4072681:4079665407966540810471383Escherichia coli SMS-3-5, complete genomesugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein8e-44178
NC_011751:4293966:4295130429513042965121383Escherichia coli UMN026 chromosome, complete genomeputative transporter8e-44178
NC_013361:4959323:4966962496696249683441383Escherichia coli O26:H11 str. 11368 chromosome, complete genometransporter9e-44178
CP002185:4035502:4041103404110340424851383Escherichia coli W, complete genomepredicted transporter9e-44178
NC_010468:49074:5584455844572261383Escherichia coli ATCC 8739, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter9e-44178
NC_000964:649781:6681496681496695401392Bacillus subtilis subsp. subtilis str. 168, complete genomeH+-symporter2e-43177
CP002516:44744:6353163531649701440Escherichia coli KO11, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter1e-43177
NC_016902:44744:6353163531649701440Escherichia coli KO11FL chromosome, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter1e-43177
NC_015566:2328771:2340415234041523417911377Serratia sp. AS12 chromosome, complete genomesugar (glycoside-Pentoside-Hexuronide) transporter2e-43176
NC_015567:2328782:2340426234042623418021377Serratia sp. AS9 chromosome, complete genomesugar (glycoside-Pentoside-Hexuronide) transporter2e-43176
NC_004431:4270305:4272633427263342740721440Escherichia coli CFT073, complete genomeHypothetical symporter yicJ5e-43175
NC_008253:3941938:3946114394611439475411428Escherichia coli 536, complete genomehypothetical membrane protein YicJ6e-43175
NC_011601:4096427:4100603410060341019851383Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransporter6e-43175
NC_015968:74124:8721187211886021392Enterobacter asburiae LF7a chromosome, complete genomesugar (glycoside-Pentoside-Hexuronide) transporter1e-42174
NC_015663:1356982:1361647136164713630411395Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transporter9e-43174
NC_020272:3325000:3326199332619933275751377Bacillus amyloliquefaciens IT-45, complete genomeputative glucitol transport protein GutA2e-42173
NC_013171:1731491:1732887173288717342751389Anaerococcus prevotii DSM 20548, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter6e-42172
NC_003198:3881221:3900832390083239022141383Salmonella enterica subsp. enterica serovar Typhi str. CT18,sodium:galactoside family symporter4e-42172
NC_011149:3863913:3866243386624338676251383Salmonella enterica subsp. enterica serovar Agona str. SL483,sodium:galactoside family symporter4e-42172
NC_012125:3879917:3884059388405938854411383Salmonella enterica subsp. enterica serovar Paratyphi C straintransporter4e-42172
NC_016832:3858815:3875128387512838765101383Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Inner membrane symporter yicJ4e-42172
NC_016860:3964000:3969802396980239711841383Salmonella enterica subsp. enterica serovar Typhimurium strputative transport protein4e-42172
NC_016863:3905875:3908205390820539095871383Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transporter4e-42172
NC_013716:4306695:4384578438457843859691392Citrobacter rodentium ICC168, complete genomeputative carbohydrate transporter4e-42172
NC_016514:506611:5066115066115080021392Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YagG2e-41170
NC_014618:57707:8000180001813951395Enterobacter cloacae SCF1 chromosome, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter3e-41169
NC_015566:2328771:2336703233670323380911389Serratia sp. AS12 chromosome, complete genomesugar (glycoside-Pentoside-Hexuronide) transporter3e-40166
NC_015567:2328782:2336714233671423381021389Serratia sp. AS9 chromosome, complete genomesugar (glycoside-Pentoside-Hexuronide) transporter3e-40166
NC_014840:205723:2171292171292185501422Pantoea sp. At-9b plasmid pPAT9B03, complete sequencesugar (Glycoside-Pentoside-Hexuronide) transporter4e-40166
NC_014328:85290:1245081245081258871380Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative cation symporter2e-39163
AC_000091:273325:2846192846192860011383Escherichia coli W3110 DNA, complete genomepredicted sugar transporter2e-39163
NC_010473:247429:2587232587232601051383Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-6 prophage; predicted sugar transporter2e-39163
NC_000913:272071:2846192846192860011383Escherichia coli K12, complete genomeCP4-6 prophage; predicted sugar transporter2e-39163
NC_013171:1731491:1731491173149117328851395Anaerococcus prevotii DSM 20548, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter7e-39162
NC_017190:591139:6131076131076143961290Bacillus amyloliquefaciens LL3 chromosome, complete genomesymporter ynaJ7e-39162
NC_015634:359500:4039044039044052531350Bacillus coagulans 2-6 chromosome, complete genomexylose transporter4e-38159
NC_013171:75110:8922489224905701347Anaerococcus prevotii DSM 20548, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter4e-38159
NC_021066:3201500:3203435320343532048411407Raoultella ornithinolytica B6, complete genomeGPH family transporter2e-36154
NC_015428:193817:2123602123602137781419Lactobacillus buchneri NRRL B-30929 chromosome, complete genomesugar (glycoside-Pentoside-Hexuronide) transporter2e-36154
NC_012214:897206:9116179116179130321416Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein5e-35149
NC_010067:3247169:3261085326108532625151431Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-35149
NC_006155:3846315:3851947385194738533711425Yersinia pseudotuberculosis IP 32953, complete genomeSodium:galactoside symporter (GPH) family protein.3e-35149
NC_010634:3762532:3765003376500337664271425Yersinia pseudotuberculosis PB1/+, complete genomesugar (glycoside-Pentoside-hexuronide) transporter3e-35149
NC_009708:853063:8667838667838682071425Yersinia pseudotuberculosis IP 31758 chromosome, complete genomesugar (glycoside-Pentoside-hexuronide) transporter3e-35149
NC_010465:868402:8859668859668873901425Yersinia pseudotuberculosis YPIII, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter3e-35149
NC_010694:891967:9063159063159077301416Erwinia tasmaniensis, complete genomehypothetical protein2e-34147
NC_012815:1862373:1876816187681618782611446Bifidobacterium animalis subsp. lactis DSM 10140, complete genomeNa+/xyloside symporter related transporter2e-34147
NC_015761:2982000:3008930300893030103571428Salmonella bongori NCTC 12419, complete genomemembrane transport protein1e-33144
NC_010571:3322467:3335944333594433373711428Opitutus terrae PB90-1, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter7e-33142
NC_013961:2932348:2933872293387229352871416Erwinia amylovora, complete genomeputative GPH family transporter9e-32138
NC_013971:817284:8360958360958375101416Erwinia amylovora ATCC 49946 chromosome, complete genomemajor facilitator superfamily protein9e-32138
NC_014618:3482053:3493203349320334946031401Enterobacter cloacae SCF1 chromosome, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter1e-30134
NC_003919:5023500:5026497502649750279841488Xanthomonas axonopodis pv. citri str. 306, complete genometransport protein2e-29130
NC_017191:1568369:159873115987311599660930Bacillus amyloliquefaciens XH7 chromosome, complete genomeH+-xyloside symporter4e-29129
NC_017190:1832402:184442818444281845357930Bacillus amyloliquefaciens LL3 chromosome, complete genomesymporter ynaJ4e-29129
NC_017271:4764404:4767444476744447689311488Xanthomonas campestris pv. raphani 756C chromosome, completetransporter8e-28125
NC_018720:2097694:2097694209769420991421449Bifidobacterium asteroides PRL2011 chromosome, complete genometransporter, probably Glucuronide permease4e-27122
NC_012997:1446037:1471524147152414729931470Teredinibacter turnerae T7901, complete genomesugar transporter2e-26120
NC_011283:4966471:4969854496985449713081455Klebsiella pneumoniae 342 chromosome, complete genomexyloside permease7e-26118
NC_013850:4829455:4832839483283948342931455Klebsiella variicola At-22 chromosome, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter7e-26118
NC_015663:4447984:4452420445242044538741455Enterobacter aerogenes KCTC 2190 chromosome, complete genomesugar (glycoside-Pentoside-Hexuronide) transporter8e-26118
NC_012731:600518:6556946556946571871494Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein1e-25117
NC_020181:969599:9832189832189846721455Enterobacter aerogenes EA1509E, complete genomeXyloside transporter XynT2e-25117
NC_008526:565902:5666605666605680211362Lactobacillus casei ATCC 334, complete genomeNa+/xyloside symporter related transporter9e-25115
NC_010999:623489:6256706256706270311362Lactobacillus casei, complete genomeXylP protein7e-25115
NC_020064:3517500:3524731352473135261851455Serratia marcescens FGI94, complete genomeglycoside/pentoside/hexuronide transporter5e-25115
NC_018515:3600869:3621772362177236231271356Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeglycoside/pentoside/hexuronide transporter1e-23110
NC_013714:1830959:1850724185072418521781455Bifidobacterium dentium Bd1, complete genomeLacS Galactoside symporter9e-23108
NC_008618:1456000:1474510147451014759821473Bifidobacterium adolescentis ATCC 15703, complete genomegalactoside symporter1e-22108
NC_008525:561000:5621115621115640391929Pediococcus pentosaceus ATCC 25745, complete genomeNa+/xyloside symporter related transporter1e-20101
NC_016027:229180:2291802291802305201341Gluconacetobacter xylinus NBRC 3288, complete genomemajor facilitator superfamily sugar transporter6e-2099.4
NC_015275:3594890:3601151360115136025631413Clostridium lentocellum DSM 5427 chromosome, complete genomesugar (Glycoside-Pentoside-Hexuronide) transporter3e-1893.6
NC_011978:1500663:1500663150066315020931431Thermotoga neapolitana DSM 4359, complete genomeSugar:cation symporter family protein4e-1892.8
NC_014656:1161188:1197332119733211989511620Bifidobacterium longum subsp. longum BBMN68 chromosome, completehypothetical protein8e-1892
NC_010610:908452:9160549160549180241971Lactobacillus fermentum IFO 3956, complete genomelactose transport protein2e-1480.9
NC_014624:287500:2910832910832924771395Eubacterium limosum KIST612 chromosome, complete genomeNa+/melibiose symporter-like transporter1e-0965.1
NC_014376:1217000:1257664125766412590311368Clostridium saccharolyticum WM1 chromosome, complete genomemajor facilitator superfamily MFS_14e-0859.7
NC_017080:2095706:2118004211800421196141611Phycisphaera mikurensis NBRC 102666, complete genomemajor facilitator superfamily protein8e-0858.9
NC_014221:2943950:2962727296272729641181392Truepera radiovictrix DSM 17093 chromosome, complete genomemajor facilitator superfamily MFS_11e-0758.5
NC_015152:3100312:3114151311415131156231473Spirochaeta sp. Buddy chromosome, complete genomesugar (glycoside-Pentoside-Hexuronide) transporter1e-0655.1
NC_009511:1746631:1766064176606417674251362Sphingomonas wittichii RW1 chromosome, complete genomeNa+/melibiose symporter and related transporter-like protein7e-0652.4