Pre_GI: BLASTP Hits

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Query: NC_011080:2870428:2873843 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2873843, End: 2874172, Length: 330

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020260:312805:322108322108322404297Cronobacter sakazakii Sp291, complete genomegp912e-1787.8
NC_009848:582775:595915595915596172258Bacillus pumilus SAFR-032, complete genomehypothetical protein2e-1167.4
NC_009778:2993218:301087530108753011132258Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-1167
NC_016514:2334870:234189123418912342391501Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein6e-1166.2
NC_010674:2856997:286025428602542860697444Clostridium botulinum B str. Eklund 17B, complete genomegp911e-1065.1
NC_013766:679906:690676690676690924249Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein1e-0962
NC_011660:2924397:293798329379832938210228Listeria monocytogenes HCC23 chromosome, complete genomegp697e-0959.3
NC_003212:1713958:174490717449071745158252Listeria innocua Clip11262, complete genomehypothetical protein1e-0858.5
NC_020126:2381380:240244724024472402695249Myxococcus stipitatus DSM 14675, complete genomehypothetical protein3e-0857.4