Pre_GI: BLASTP Hits

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Query: NC_011080:2789744:2798991 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2798991, End: 2799106, Length: 116

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:283364:295078295078295193116Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,5S ribosomal RNA3e-1477.4
NC_011149:2701916:270988227098822709997116Salmonella enterica subsp. enterica serovar Agona str. SL483,5S ribosomal RNA7e-1475.9
CP002797:4812799:482317448231744823289116Escherichia coli NA114, complete genome5S ribosomal RNA1e-1375.5
NC_012779:610509:627667627667627782116Edwardsiella ictaluri 93-146, complete genome5S ribosomal RNA1e-1375.1
NC_016902:3863932:388255938825593882674116Escherichia coli KO11FL chromosome, complete genome5S ribosomal RNA1e-1374.7
CP002516:1196000:120874812087481208863116Escherichia coli KO11, complete genome5S ribosomal RNA1e-1374.7
NC_010067:4149298:415721141572114157326116Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete5S ribosomal RNA1e-1374.7
CP002516:3863932:388255938825593882674116Escherichia coli KO11, complete genome5S ribosomal RNA1e-1374.7
NC_015566:4205854:421272142127214212836116Serratia sp. AS12 chromosome, complete genome5S ribosomal RNA4e-1373.6
NC_009832:4136878:414391041439104144025116Serratia proteamaculans 568, complete genome5S ribosomal RNA4e-1373.6
NC_010067:4149298:415745641574564157571116Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete5S ribosomal RNA5e-1373.2
NC_015964:1389628:140163114016311401746116Haemophilus parainfluenzae T3T1, complete genome5S ribosomal RNA4e-0960.1
NC_006371:1997954:200689020068902007007118Photobacterium profundum SS9 chromosome 2, complete sequence5S ribosomal RNA4e-0857
NC_008577:44184:558265582655941116Shewanella sp. ANA-3 chromosome 1, complete sequence5S ribosomal RNA5e-0856.6
NC_011186:515214:529052529052529172121Vibrio fischeri MJ11 chromosome II, complete sequence5S ribosomal RNA2e-0754.3
NC_008610:1068429:107726410772641077379116Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),5S ribosomal RNA3e-0650.4