Pre_GI: BLASTP Hits

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Query: NC_011080:2761403:2766783 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 2766783, End: 2767481, Length: 699

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:2756000:276381627638162764514699Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein5e-127453
NC_016856:2812905:281828528182852818983699Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SEaa15e-127453
NC_011205:609464:6195466195466206281083Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853Eaa protein4e-57221
NC_016845:1285435:130060613006061301559954Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,Eaa14e-50197
NC_009800:289000:293833293833294474642Escherichia coli HS, complete genomehypothetical protein7e-40164
NC_011083:374000:379255379255379941687Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,Eaa protein5e-39160
NC_009648:1541699:154475115447511545362612Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein9e-39160
NC_011294:2053991:205626120562612057124864Salmonella enterica subsp. enterica serovar Enteritidis strphage protein4e-22104
NC_011094:593100:602303602303602980678Salmonella enterica subsp. enterica serovar Schwarzengrund strvalyl-tRNA synthetase5e-21101