Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1979693 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1979693, End: 1980352, Length: 660

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1905454:193366519336651934324660Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein2e-101367
NC_016860:1943203:196961019696101970269660Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-101367
NC_016857:1903426:193163719316371932296660Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein2e-101367
NC_016856:1957263:198547419854741986133660Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein2e-101367
NC_016810:1903426:193163719316371932296660Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-101367
NC_003197:1945858:197406919740691974728660Salmonella typhimurium LT2, complete genomeputative inner membrane protein2e-101367
NC_016822:1339058:136144013614401362099660Shigella sonnei 53G, complete genomehypothetical protein6e-79293
NC_007384:1355060:137859213785921379251660Shigella sonnei Ss046, complete genomehypothetical protein6e-79293
NC_008258:1873805:189354118935411894200660Shigella flexneri 5 str. 8401, complete genomehypothetical protein3e-77288
NC_015224:2095816:211006021100602110716657Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative inner membrane protein1e-64245
NC_013850:1887556:188755618875561888218663Klebsiella variicola At-22 chromosome, complete genomeprotein of unknown function DUF5334e-58224
NC_013421:3117639:312370331237033124356654Pectobacterium wasabiae WPP163, complete genomeprotein of unknown function DUF5336e-47187
NC_009708:915814:930649930649930918270Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein3e-31135
NC_009708:915814:930920930920931306387Yersinia pseudotuberculosis IP 31758 chromosome, complete genome1e-20100
NC_009654:1729159:173941117394111740136726Marinomonas sp. MWYL1, complete genomehypothetical protein5e-1580.9
NC_014532:1191267:121159712115971212307711Halomonas elongata DSM 2581, complete genomeprotein of unknown function DUF5331e-1479.7
NC_013173:953633:987635987635988321687Desulfomicrobium baculatum DSM 4028, complete genomeprotein of unknown function DUF5332e-1065.5