Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1974287 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1974287, End: 1975162, Length: 876

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014640:1179382:119669911966991197625927Achromobacter xylosoxidans A8 chromosome, complete genomecopper resistance protein D3e-0652.8
NC_012912:2553391:256363625636362564511876Dickeya zeae Ech1591, complete genomecopper resistance D domain protein5e-38158
NC_009138:1518315:153784815378481538768921Herminiimonas arsenicoxydans, complete genomeCopper resistance protein D1e-0757.4
NC_009659:892272:897993897993898925933Janthinobacterium sp. Marseille chromosome, complete genomecopper resistance protein D2e-0859.7
NC_009659:1923925:195516619551661956086921Janthinobacterium sp. Marseille chromosome, complete genomecopper resistance protein D4e-1168.9
NC_013850:1887556:189186318918631892732870Klebsiella variicola At-22 chromosome, complete genomecopper resistance D domain protein2e-66253
NC_016816:2073677:207716420771642078039876Pantoea ananatis LMG 5342, complete genomecopper resistance D domain-containing protein1e-44180
NC_007492:4310828:431385843138584314721864Pseudomonas fluorescens PfO-1, complete genomeCopper resistance D3e-0652.8
NC_016818:3114460:313046431304643131348885Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative copper export protein9e-36150
NC_017047:3174588:319449831944983195382885Rahnella aquatilis HX2 chromosome, complete genomeputative copper resistance protein D2e-37156
NC_015061:3111211:312989631298963130780885Rahnella sp. Y9602 chromosome, complete genomecopper resistance D domain-containing protein2e-37156
NC_010682:1913941:192672619267261927655930Ralstonia pickettii 12J chromosome 1, complete sequencecopper resistance D domain protein4e-0962.4
NC_011205:1345511:134982813498281350703876Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853copper resistance protein D1e-143509
NC_011294:1220526:122484312248431225718876Salmonella enterica subsp. enterica serovar Enteritidis strcation transporter7e-145513
NC_011083:1993672:201768720176872018562876Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,copper resistance protein D7e-145513
NC_011147:1057259:106157610615761062451876Salmonella enterica subsp. enterica serovar Paratyphi A strcation transporter1e-143509
NC_006511:1063249:106756610675661068441876Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative cation transporter1e-143509
NC_010102:1137247:114156411415641142439876Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-144512
NC_012125:1897611:190197719019771902801825Salmonella enterica subsp. enterica serovar Paratyphi C straincation transporter4e-135480
NC_011094:1923870:194722719472271948102876Salmonella enterica subsp. enterica serovar Schwarzengrund strcopper resistance protein D1e-143508
NC_003198:1908238:193430319343031935178876Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative cation transporter1e-144512
NC_016832:1090274:109027410902741091149876Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Inner membrane protein yebZ1e-144512
NC_004631:1091303:109130310913031092178876Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative cation transporter1e-144512
NC_016860:1943203:196420719642071965082876Salmonella enterica subsp. enterica serovar Typhimurium strputative cation transporter2e-143508
NC_016810:1903426:192623419262341927109876Salmonella enterica subsp. enterica serovar Typhimurium strputative cation transporter2e-143508
NC_016856:1957263:198007119800711980946876Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein2e-143508
NC_017046:1902788:192559719255971926421825Salmonella enterica subsp. enterica serovar Typhimurium str. 798cation transporter1e-133475
NC_016857:1903426:192623419262341927109876Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein2e-143508
NC_016863:1905454:192826219282621929137876Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein2e-143508
NC_003197:1945858:196866619686661969541876Salmonella typhimurium LT2, complete genomeputative inner membrane protein2e-143508
NC_020064:2728569:275188427518842752765882Serratia marcescens FGI94, complete genomeputative copper export protein4e-33141
NC_015566:2039431:204599420459942046875882Serratia sp. AS12 chromosome, complete genomecopper resistance D domain-containing protein7e-40164
NC_015567:2039443:204600620460062046887882Serratia sp. AS9 chromosome, complete genomecopper resistance D domain-containing protein7e-40164
NC_008258:1873805:188821218882121889084873Shigella flexneri 5 str. 8401, complete genomeputative resistance protein4e-93341
NC_010159:1668795:167550616755061676390885Yersinia pestis Angola, complete genomecopper resistance protein D5e-36151
NC_010634:2004653:201331520133152014199885Yersinia pseudotuberculosis PB1/+, complete genomecopper resistance D domain-containing protein5e-36151