Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1973917 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1973917, End: 1974270, Length: 354

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:1902788:192522719252271925580354Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein7e-63238
NC_004631:1091303:109219510921951092548354Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-62238
NC_003198:1908238:193393319339331934286354Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-62238
NC_006511:1063249:106845810684581068811354Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-62238
NC_011147:1057259:106246810624681062821354Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-62238
NC_016832:1090274:109116610911661091519354Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-62238
NC_003197:1945858:196829619682961968649354Salmonella typhimurium LT2, complete genomehypothetical protein7e-63238
NC_010102:1137247:114245611424561142809354Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-63238
NC_011083:1993672:201731720173172017670354Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein7e-63238
NC_012125:1897611:190281819028181903171354Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein7e-63238
NC_016810:1903426:192586419258641926217354Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-63238
NC_016856:1957263:197970119797011980054354Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein7e-63238
NC_016857:1903426:192586419258641926217354Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein7e-63238
NC_016860:1943203:196383719638371964190354Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-63238
NC_016863:1905454:192789219278921928245354Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein7e-63238
NC_011205:1345511:135072013507201351073354Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-62236
NC_011294:1220526:122573512257351226088354Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-62236
NC_011094:1923870:194685719468571947210354Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein9e-61231
NC_008258:1873805:188785818878581888199342Shigella flexneri 5 str. 8401, complete genomehypothetical protein1e-43174
NC_013850:1887556:189274918927491893087339Klebsiella variicola At-22 chromosome, complete genomeProtein of unknown function DUF25116e-43172
NC_016818:3114460:313007831300783130413336Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein1e-31135
NC_015061:3111211:312951031295103129845336Rahnella sp. Y9602 chromosome, complete genomehypothetical protein1e-31134
NC_017047:3174588:319411231941123194447336Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-31134
NC_012912:2553391:256171325617132562051339Dickeya zeae Ech1591, complete genomehypothetical protein4e-31133
NC_013421:2306000:231489723148972315253357Pectobacterium wasabiae WPP163, complete genomeProtein of unknown function DUF25114e-27120
NC_010159:1668795:167506816750681675409342Yersinia pestis Angola, complete genomehypothetical protein3e-27120
NC_010634:2004653:201429620142962014637342Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein3e-27120
NC_016816:2073677:207806720780672078414348Pantoea ananatis LMG 5342, complete genomehypothetical protein2e-27120
NC_015566:2039431:204694520469452047286342Serratia sp. AS12 chromosome, complete genomehypothetical protein1e-25115
NC_015567:2039443:204695720469572047298342Serratia sp. AS9 chromosome, complete genomehypothetical protein1e-25115
NC_020064:2728569:275147427514742751815342Serratia marcescens FGI94, complete genomeProtein of unknown function (DUF2511)8e-1889
NC_020418:3022891:303624730362473036588342Morganella morganii subsp. morganii KT, complete genomehypothetical protein5e-1476.3
NC_015410:2351464:237702523770252377306282Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein9e-0855.5