Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1972465 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1972465, End: 1973544, Length: 1080

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:1220526:1226471122647112275501080Salmonella enterica subsp. enterica serovar Enteritidis strintegrase0733
NC_010102:1137247:1149438114943811505171080Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0733
NC_011205:1345511:1351456135145613525351080Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage integrase0732
NC_011205:1391971:1399187139918714002661080Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853integrase0728
NC_011094:1923870:1945403194540319464821080Salmonella enterica subsp. enterica serovar Schwarzengrund strphage integrase0704
NC_003197:1945858:196702619670261967922897Salmonella typhimurium LT2, complete genome5e-172603
NC_016810:1903426:192459419245941925490897Salmonella enterica subsp. enterica serovar Typhimurium strIntegrase5e-172603
NC_016856:1957263:197843119784311979327897Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sintegrase5e-172603
NC_016857:1903426:192459419245941925490897Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative phage integrase protein5e-172603
NC_016863:1905454:192662219266221927518897Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative phage integrase protein5e-172603
NC_017046:1902788:192395719239571924853897Salmonella enterica subsp. enterica serovar Typhimurium str. 798Integrase5e-172603
NC_016860:1943203:196260919626091963463855Salmonella enterica subsp. enterica serovar Typhimurium strintegrase1e-163576
NC_011083:1993672:201608920160892016943855Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,integrase1e-163576
NC_003198:1908238:1932482193248219335581077Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative integrase3e-150531
NC_010102:1137247:114318211431821144009828Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-150530
NC_008258:1873805:1886389188638918874651077Shigella flexneri 5 str. 8401, complete genomeputative phage integrase protein1e-149529
NC_013850:1887556:1893425189342518945101086Klebsiella variicola At-22 chromosome, complete genomelambda integrase3e-108392
NC_012125:1897611:190354519035451904273729Salmonella enterica subsp. enterica serovar Paratyphi C strainphage integrase protein5e-107387
NC_016831:1690811:171376217137621714373612Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein7e-99360
NC_011080:1944226:195729619572961957808513Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-85317
NC_006511:1063249:106919410691941070035842Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-81303
NC_013364:2898964:2916736291673629178061071Escherichia coli O111:H- str. 11128, complete genomeputative integrase5e-75281
NC_011601:1039500:1043517104351710445901074Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase3e-74279
NC_011601:717072:7208917208917219611071Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase2e-69263
NC_013941:975353:9807899807899818591071Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage integrase family2e-69262
NC_012967:786534:7879527879527890221071Escherichia coli B str. REL606 chromosome, complete genomeintegrase2e-69262
NC_007712:1516589:1520735152073515218021068Sodalis glossinidius str. 'morsitans', complete genomephage integrase2e-64246
NC_011149:1236689:123668912366891237048360Salmonella enterica subsp. enterica serovar Agona str. SL483,integrase4e-62238
NC_012779:1966205:1973860197386019749541095Edwardsiella ictaluri 93-146, complete genomeintegrase1e-61236
NC_013508:1687432:1700197170019717012911095Edwardsiella tarda EIB202, complete genomeputative phage integrase protein3e-61235
NC_012947:3015985:302838230283823029305924Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completelambda integrase5e-55215
NC_011147:1057259:106945410694541069783330Salmonella enterica subsp. enterica serovar Paratyphi A str5e-54211
NC_006511:1063249:107544410754441075773330Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative phage integrase protein5e-54211
NC_013941:1613595:162264716226471623387741Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeintegrase8e-54211
NC_011353:1716037:172511817251181725858741Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-53210
NC_002655:2264773:228294922829492283650702Escherichia coli O157:H7 EDL933, complete genomeputative integrase fragment7e-52204
NC_011601:1466496:147555814755581476250693Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome2e-51202
NC_013361:1754346:176509417650941765786693Escherichia coli O26:H11 str. 11368 chromosome, complete genome4e-51202
NC_013008:1715831:172409317240931724785693Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeintegrase4e-51202
NC_002695:1794635:180352718035271804219693Escherichia coli O157:H7 str. Sakai, complete genomeintegrase4e-51202
NC_012731:2083650:2089612208961220907541143Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeprophage lambda integrase6e-51201
NC_013422:1755875:1797967179796717991241158Halothiobacillus neapolitanus c2, complete genomelambda integrase6e-51201
NC_015062:99969:1087051087051098291125Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencelambda integrase9e-51201
NC_014562:983398:9899719899719911161146Pantoea vagans C9-1 chromosome, complete genomeIntegrase3e-50199
NC_011083:1993672:200564220056422006010369Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein3e-50199
NC_003197:1945858:195783519578351958203369Salmonella typhimurium LT2, complete genome3e-50199
NC_011080:1944226:196285119628511963219369Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein3e-50199
NC_016810:1903426:191540319154031915771369Salmonella enterica subsp. enterica serovar Typhimurium str3e-50199
NC_016860:1943203:195518019551801955548369Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein3e-50199
NC_016863:1905454:191743119174311917799369Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein3e-50199
NC_011147:1057259:107796010779601078328369Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein9e-50197
NC_006511:1063249:108395010839501084318369Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative cytoplasmic protein9e-50197
NC_006905:1961774:197374719737471974115369Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-49196
NC_017060:59500:1055351055351066591125Rahnella aquatilis HX2 plasmid PRA1, complete sequencelambda integrase3e-49196
NC_007712:2897000:2906392290639229075161125Sodalis glossinidius str. 'morsitans', complete genomephage integrase4e-49195
NC_011770:1431740:1433854143385414349571104Pseudomonas aeruginosa LESB58, complete genomephage integrase, putative2e-48193
NC_011751:1405381:1411252141125214123941143Escherichia coli UMN026 chromosome, complete genomephage integrase2e-48193
NC_011742:1177946:1182443118244311835851143Escherichia coli S88 chromosome, complete genomephage integrase2e-48192
NC_007946:1239278:1241467124146712426091143Escherichia coli UTI89, complete genomeprophage lambda integrase2e-48192
NC_008563:1175035:1178855117885511799971143Escherichia coli APEC O1, complete genomeprophage lambda integrase2e-48192
AC_000091:1191353:1201256120125612023831128Escherichia coli W3110 DNA, complete genomepredicted integrase1e-46187
NC_000913:1188999:1198902119890212000291128Escherichia coli K12, complete genomee14 prophage; predicted integrase1e-46187
NC_012125:1897611:190945919094591909728270Salmonella enterica subsp. enterica serovar Paratyphi C strainphage integrase protein1e-45184
NC_007650:1192310:1197986119798611991131128Burkholderia thailandensis E264 chromosome II, complete sequenceintegrase-like protein2e-45182
NC_017046:1902788:191480419148041915133330Salmonella enterica subsp. enterica serovar Typhimurium str. 7983e-45182
NC_016857:1903426:191544219154421915771330Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein3e-45182
NC_016856:1957263:196927919692791969608330Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-45182
NC_014838:218000:2249612249612261031143Pantoea sp. At-9b plasmid pPAT9B01, complete sequencelambda integrase3e-45182
NC_013282:1804909:1812665181266518138131149Cronobacter turicensis, complete genomeProphage lambda integrase5e-45181
NC_009801:1392696:1417903141790314190331131Escherichia coli E24377A, complete genomesite-specific recombinase, phage integrase family1e-44180
NC_012125:1897611:191861119186111918940330Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein3e-44179
CU928145:1408280:1408280140828014094101131Escherichia coli 55989 chromosome, complete genomephage integrase9e-44177
NC_011748:1408280:1408280140828014094101131Escherichia coli 55989, complete genomephage integrase9e-44177
NC_013364:1997891:1998117199811719992471131Escherichia coli O111:H- str. 11128, complete genomeputative integrase9e-44177
NC_011283:2836000:2907727290772729088661140Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase1e-43177
NC_007712:1791766:179714417971441797914771Sodalis glossinidius str. 'morsitans', complete genomeputative phage integrase3e-43176
NC_013008:1715831:1736291173629117374211131Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeintegrase for prophage CP-933O4e-43175
NC_011353:1716037:1737316173731617384461131Escherichia coli O157:H7 str. EC4115 chromosome, complete genomesite-specific recombinase, phage integrase family4e-43175
NC_016612:3803130:3809103380910338102301128Klebsiella oxytoca KCTC 1686 chromosome, complete genomesite-specific recombinase, phage integrase family protein6e-43174
NC_016832:1090274:109188310918831092152270Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Phage integrase6e-40165
NC_016831:1690811:171438817143881714657270Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-38160
NC_012791:2590500:2590574259057425916621089Variovorax paradoxus S110 chromosome 1, complete genomeintegrase family protein5e-38158
NC_009832:2211154:222325822232582224040783Serratia proteamaculans 568, complete genomeintegrase family protein9e-37154
NC_020418:2910593:291768229176822918563882Morganella morganii subsp. morganii KT, complete genomePhage integrase1e-33144
NC_013364:1997891:201108120110812011473393Escherichia coli O111:H- str. 11128, complete genome3e-29129
NC_011770:2499432:2540392254039225415041113Pseudomonas aeruginosa LESB58, complete genomephage integrase, putative4e-27122
NC_004631:1091303:109293910929391093139201Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-26118
NC_003198:1867456:188799318879931888193201Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-26118
NC_011740:1831845:184836618483661848854489Escherichia fergusonii ATCC 35469, complete genome1e-23111
NC_011294:1220526:125758412575841257943360Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-21103
NC_017506:2089769:2107666210766621087871122Marinobacter adhaerens HP15 chromosome, complete genomeprophage lambda integrase4e-1995.9
NC_010102:1137247:116150011615001161820321Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1687.4
NC_009778:959982:9698359698359710191185Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein9e-1684.7
NC_015379:4691868:470798047079804708960981Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative integrase1e-1377.4
NC_015566:3659318:3669051366905136702291179Serratia sp. AS12 chromosome, complete genomehypothetical protein2e-1376.6
NC_020418:2868000:287747828774782877876399Morganella morganii subsp. morganii KT, complete genomePhage integrase3e-1376.6
NC_007645:4677965:469104446910444691523480Hahella chejuensis KCTC 2396, complete genomeIntegrase8e-1375.1
NC_007974:1007834:102021810202181020673456Ralstonia metallidurans CH34 chromosome 2, complete sequencephage integrase2e-1273.9
NC_013508:1687432:169951816995181699856339Edwardsiella tarda EIB202, complete genomeputative phage integrase protein6e-1065.5
NC_014774:1210004:125682512568251257724900Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completeintegrase family protein6e-0962
NC_017033:1052000:1053148105314810541671020Frateuria aurantia DSM 6220 chromosome, complete genomesite-specific recombinase XerC4e-0859.3
NC_007712:1954808:1974024197402419750401017Sodalis glossinidius str. 'morsitans', complete genomephage integrase7e-0755.5
NC_012721:1052883:105740610574061057858453Burkholderia glumae BGR1 chromosome 2, complete genomePhage integrase family protein1e-0654.3
CP002797:4812799:4826760482676048278061047Escherichia coli NA114, complete genomePutative integrase2e-0653.9
NC_006155:2116834:2128303212830321293251023Yersinia pseudotuberculosis IP 32953, complete genomeputative integrase3e-0653.1
NC_016602:3122700:3133060313306031342471188Vibrio furnissii NCTC 11218 chromosome 1, complete sequencephage integrase family protein3e-0653.1
NC_012947:3015985:303373730337373033898162Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete5e-0652.4
NC_010501:4379920:4392912439291243939341023Pseudomonas putida W619, complete genomeintegrase family protein6e-0652