Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1971521 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1971521, End: 1972468, Length: 948

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:1137247:1150514115051411516201107Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-165579
NC_011205:1391971:140026314002631401210948Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853exodeoxyribonuclease 82e-160565
NC_011094:1923870:1944300194430019454061107Salmonella enterica subsp. enterica serovar Schwarzengrund strexodeoxyribonuclease 81e-158559
NC_011205:1345511:1354431135443113571212691Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853exonuclease VIII1e-152539
NC_016831:1734292:1756528175652817592182691Salmonella enterica subsp. enterica serovar Gallinarum/pullorumExodeoxyribonuclease VIII4e-152537
NC_002655:2142587:2160309216030921629092601Escherichia coli O157:H7 EDL933, complete genomeputative exodeoxyribonuclease VIII of prophage CP-933R1e-84313
NC_012967:1403733:1411956141195614145562601Escherichia coli B str. REL606 chromosome, complete genomeexonuclease VIII8e-85313
CP002516:2580774:2599925259992526025252601Escherichia coli KO11, complete genomeexodeoxyribonuclease VIII8e-85313
CP002185:1493280:1503325150332515059252601Escherichia coli W, complete genomeRac prophage; exonuclease VIII, 5' -3' specific dsDNA exonuclease8e-85313
NC_016902:2580774:2599925259992526025252601Escherichia coli KO11FL chromosome, complete genomeexodeoxyribonuclease VIII8e-85313
NC_000913:1404000:1412810141281014154102601Escherichia coli K12, complete genome 3' specific dsDNA exonuclease' target='_blank' title='Search database for similar gene annotations'>Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease2e-84312
AC_000091:1407693:1416500141650014191002601Escherichia coli W3110 DNA, complete genome 3' specific dsDNA exonuclease' target='_blank' title='Search database for similar gene annotations'>exonuclease VIII, 5' -> 3' specific dsDNA exonuclease2e-84312
NC_010473:1493983:1502206150220615048062601Escherichia coli str. K-12 substr. DH10B, complete genome 3' specific dsDNA exonuclease' target='_blank' title='Search database for similar gene annotations'>Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease2e-84312
NC_012759:1296000:1304869130486913074692601Escherichia coli BW2952 chromosome, complete genomeexonuclease VIII2e-84312
NC_011415:1472500:1478214147821414808142601Escherichia coli SE11 chromosome, complete genomeexonuclease VIII2e-83309
NC_016810:1903426:192392319239231924576654Salmonella enterica subsp. enterica serovar Typhimurium str2e-82305
NC_016857:1903426:192392319239231924576654Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74exodeoxyribonuclease VIII2e-82305
NC_016860:1943203:196189619618961962549654Salmonella enterica subsp. enterica serovar Typhimurium strexonuclease VIII2e-82305
NC_017046:1902788:192328619232861923939654Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage encoded Exodeoxyribonuclease VIII2e-82305
NC_003197:1945858:196651419665141967008495Salmonella typhimurium LT2, complete genomeRecE-like protein2e-82305
NC_016863:1905454:192611019261101926604495Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1RecE-like protein2e-82305
NC_016856:1957263:197776019777601978413654Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SRecE-like protein2e-81303
NC_011083:1993672:201537620153762016029654Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, 3' specific dsdna exonuclease' target='_blank' title='Search database for similar gene annotations'>rac prophage; exonuclease VIII, 5' -> 3' specific dsdna exonuclease6e-81300
NC_011274:1299475:131117213111721311666495Salmonella enterica subsp. enterica serovar Gallinarum str. 287/916e-75281
NC_016831:1690811:171309117130911713744654Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-73276
NC_011294:1220526:124705712470571247556500Salmonella enterica subsp. enterica serovar Enteritidis str6e-69261
NC_014306:3524980:357527135752713576089819Erwinia billingiae Eb661, complete genomephage exonuclease VIII9e-43174
NC_003198:1908238:1927497192749719306253129Salmonella enterica subsp. enterica serovar Typhi str. CT18,exodeoxyribonuclease VIII2e-23110
NC_008258:1873805:188222618822261883152927Shigella flexneri 5 str. 8401, complete genome3e-22105
NC_010102:1829357:1831834183183418347612928Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-2099
NC_011080:2761403:2773287277328727762142928Salmonella enterica subsp. enterica serovar Newport str. SL254,gifsy-1 prophage RecE6e-2098.6
NC_016856:2812905:2824789282478928277162928Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sexodeoxyribonuclease VIII-like protein6e-2098.2
NC_017046:2756000:2770321277032127732482928Salmonella enterica subsp. enterica serovar Typhimurium str. 798exodeoxyribonuclease viii7e-2098.2
NC_009792:1770106:1790893179089317938052913Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-1894
NC_013850:2182337:2188707218870721918053099Klebsiella variicola At-22 chromosome, complete genomeexodeoxyribonuclease VIII9e-1167.8
NC_008570:2216736:2226502222650222279891488Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein6e-1065.1
NC_014394:993465:996493996493997305813Gallionella capsiferriformans ES-2 chromosome, complete genomehypothetical protein2e-0860.5
NC_009255:1344000:134836513483651349180816Burkholderia vietnamiensis G4 chromosome 2, complete sequenceexonuclease VIII2e-0756.6
NC_011283:3177350:3192012319201231936611650Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein5e-0755.5
NC_009648:1541699:1546756154675615498723117Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative entero exodeoxyribonuclease VIII7e-0755.1
NC_015663:4522109:4541184454118445441742991Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative entero exodeoxyribonuclease VIII6e-0755.1
NC_010645:1496816:149983814998381500692855Bordetella avium 197N, complete genomephage protein1e-0653.9
NC_010645:406794:408221408221409075855Bordetella avium 197N, complete genomephage-related exonuclease1e-0653.9
NC_009256:1253384:125676812567681257583816Burkholderia vietnamiensis G4 chromosome 1, complete sequence 3' specific dsDNA exonuclease' target='_blank' title='Search database for similar gene annotations'>exonuclease VIII, 5' -> 3' specific dsDNA exonuclease9e-0651.2