Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1969836 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1969836, End: 1970024, Length: 189

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016856:1957263:197623519762351976423189Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-30130
NC_010102:1137247:115289011528901153078189Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-28123
NC_016831:1690811:171156717115671711755189Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-27121
NC_011205:1391971:140270614027061402897192Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-26118
NC_016857:1903426:192246419224641922586123Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein8e-1785.9