Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1968482 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1968482, End: 1969363, Length: 882

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:1902788:192040719204071921288882Salmonella enterica subsp. enterica serovar Typhimurium str. 798Phage Tail Assembly Protein3e-162571
NC_016863:1905454:192307219230721923953882Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1phage-tail assembly-like protein3e-162571
NC_016857:1903426:192104419210441921925882Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage-tail assembly-like protein3e-162571
NC_016810:1903426:192104419210441921925882Salmonella enterica subsp. enterica serovar Typhimurium strPhage Tail Assembly Protein3e-162571
NC_003197:1945858:196347619634761964357882Salmonella typhimurium LT2, complete genomephage-tail assembly-like protein3e-162571
NC_016856:1957263:1974881197488119759391059Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphage side tail fiber assembly protein6e-162570
NC_016856:1326503:132894413289441329528585Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphage tail assembly-like protein2e-73275
NC_011083:1993672:201294720129472013378432Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-72272
NC_011205:1391971:140337014033701403795426Salmonella enterica subsp. enterica serovar Dublin str. CT_020218533e-72271
NC_016831:1690811:170886517088651709296432Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein4e-72271
NC_011080:2722492:273336927333692733947579Salmonella enterica subsp. enterica serovar Newport str. SL254,phage tail assembly protein5e-69261
NC_003197:2720726:273333727333372733915579Salmonella typhimurium LT2, complete genomephage tail assembly-like protein5e-69261
NC_016810:2719779:273102427310242731602579Salmonella enterica subsp. enterica serovar Typhimurium strDNA Binding protein5e-69261
NC_016856:2773995:278486627848662785444579Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphage tail assembly-like protein5e-69261
NC_016857:2719779:273102427310242731602579Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage tail assembly-like protein5e-69261
NC_016860:2716152:272874527287452729323579Salmonella enterica subsp. enterica serovar Typhimurium strphage tail assembly protein5e-69261
NC_016863:2721826:273307127330712733649579Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1phage tail assembly-like protein5e-69261
NC_017046:2717810:273040327304032730981579Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA Binding protein5e-69261
NC_011205:1391971:140375214037521404198447Salmonella enterica subsp. enterica serovar Dublin str. CT_020218531e-68259
NC_011274:1299475:130654113065411307110570Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91phage tail fiber assembly protein2e-62239
NC_011205:1391971:139546013954601396029570Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage tail assembly protein4e-62238
NC_011294:1006630:101675710167571017338582Salmonella enterica subsp. enterica serovar Enteritidis strphage tail fiber assembly protein1e-61236
NC_011205:1107998:111738411173841117965582Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tail fiber assembly like-protein1e-61236
NC_003197:2720726:273390527339052734729825Salmonella typhimurium LT2, complete genomephage tail assembly-like protein3e-57222
NC_011080:2722492:273393727339372734761825Salmonella enterica subsp. enterica serovar Newport str. SL254,appr-1-p processing enzyme family protein3e-57222
NC_016810:2719779:273159227315922732416825Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein3e-57222
NC_016856:2773995:278543427854342786258825Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphage tail assembly-like protein3e-57222
NC_016857:2719779:273159227315922732416825Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage tail assembly-like protein3e-57222
NC_016860:2716152:272931327293132730137825Salmonella enterica subsp. enterica serovar Typhimurium strAppr-1-p processing enzyme family protein3e-57222
NC_016863:2721826:273363927336392734463825Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1phage tail assembly-like protein3e-57222
NC_017046:2717810:273097127309712731795825Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein3e-57222
NC_011094:1923870:1940354194035419416821329Salmonella enterica subsp. enterica serovar Schwarzengrund strside tail fiber protein7e-49194
NC_009800:2788164:279908627990862799670585Escherichia coli HS, complete genometail fiber assembly protein1e-42173
NC_013941:733286:740261740261740845585Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeTail fiber assembly protein4e-42172
NC_013353:604719:611775611775612338564Escherichia coli O103:H2 str. 12009, complete genometail fiber assembly protein6e-42171
AP010958:604719:611775611775612338564Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative tail fiber assembly protein6e-42171
NC_011415:644811:652003652003652578576Escherichia coli SE11 chromosome, complete genomeputative phage tail assembly protein1e-41170
NC_011751:1377457:139651413965141397098585Escherichia coli UMN026 chromosome, complete genomeputative tail fiber chaperone; Qin prophage1e-41170
NC_013361:649518:657331657331657903573Escherichia coli O26:H11 str. 11368 chromosome, complete genometail fiber assembly protein5e-41168
NC_010473:1712984:172195917219591722534576Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; predicted tail fibre assembly protein4e-41168
AC_000091:1627049:163602416360241636599576Escherichia coli W3110 DNA, complete genomepredicted tail fibre assembly protein4e-41168
NC_000913:1625500:163233416323341632909576Escherichia coli K12, complete genomeQin prophage; predicted tail fibre assembly protein4e-41168
NC_012759:1517500:152439315243931524968576Escherichia coli BW2952 chromosome, complete genomeQin prophage; tail fiber assembly protein4e-41168
NC_011740:2737467:275506527550652755649585Escherichia fergusonii ATCC 35469, complete genomeputative tail fibre chaperone; Qin prophage1e-40166
NC_008118:56777:202220222630609Yersinia pestis Nepal516 plasmid pMT, complete sequencehypothetical protein2e-37156
NC_005815:61148:201820182626609Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completephage lambda-related tail assembly protein G2e-37156
NC_010473:623810:633475633475633912438Escherichia coli str. K-12 substr. DH10B, complete genome4e-33142
NC_010473:498252:520215520215520652438Escherichia coli str. K-12 substr. DH10B, complete genome4e-33142
AC_000091:558920:580757580757581320564Escherichia coli W3110 DNA, complete genome2e-33142
NC_000913:558920:580757580757581320564Escherichia coli K12, complete genomeDLP12 prophage; predicted tail fiber assembly protein (pseudogene)2e-33142
NC_016831:1690811:170841617084161708652237Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-29128
NC_011083:1993672:201249820124982012734237Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative Tail fiber assembly protein homolog from lambdoid prophage5e-28125
NC_011294:1220526:124264112426411242934294Salmonella enterica subsp. enterica serovar Enteritidis str4e-26118
NC_011147:1057259:106444610644461065432987Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-22105
NC_010067:892729:913864913864914135272Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-21102
NC_015578:3694813:370366437036643704242579Treponema primitia ZAS-2 chromosome, complete genomeappr-1-p processing domain-containing protein1e-1997.4
NC_011080:1166951:117451911745191175157639Salmonella enterica subsp. enterica serovar Newport str. SL254,phage tail assembly protein2e-1789.4
NC_014228:3022903:303488630348863035419534Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein7e-1787.8
NC_012962:2587756:258914625891462589769624Photorhabdus asymbiotica, complete genomesimilarities with putative tail fiber protein of prophage2e-1480.1
NC_012962:2587756:259104625910462591669624Photorhabdus asymbiotica, complete genometail fiber assembly protein homolog from lambdoid prophage e142e-1479.7
NC_014306:103545:131102131102131692591Erwinia billingiae Eb661, complete genomePhage tail assembly chaperone gp384e-1375.9
NC_013508:2587913:259568325956832596264582Edwardsiella tarda EIB202, complete genomephage tail assembly chaperone gp384e-1375.5
NC_015510:8221378:822609582260958226697603Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeAppr-1-p processing domain-containing protein5e-1375.1
NC_008576:2458573:247281424728142473392579Magnetococcus sp. MC-1, complete genomeAppr-1-p processing domain protein7e-1374.7
NC_014228:3282500:331415933141593314461303Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein6e-1168.2
NC_014562:1698253:172105917210591721649591Pantoea vagans C9-1 chromosome, complete genomeTail fiber assembly protein2e-1066.6
NC_020181:5130513:517271251727125173329618Enterobacter aerogenes EA1509E, complete genomephage tail assembly chaperone gp383e-0962.8
AC_000091:1191353:121009412100941210696603Escherichia coli W3110 DNA, complete genomepredicted tail fiber assembly protein3e-0962.8
NC_000913:1188999:120774012077401208342603Escherichia coli K12, complete genomee14 prophage; predicted tail fiber assembly protein3e-0962.8
NC_013961:3413011:342337834233783423671294Erwinia amylovora, complete genomeTail fiber assembly protein homolog from lambdoid prophage DLP125e-0962
NC_020064:871338:887210887210887809600Serratia marcescens FGI94, complete genomeCaudovirales tail fiber assembly protein9e-0961.2
NC_008258:269806:274041274041274544504Shigella flexneri 5 str. 8401, complete genomehypothetical protein8e-0961.2
NC_004337:309833:324465324465324899435Shigella flexneri 2a str. 301, complete genomeputative phage tail fibre protein1e-0860.8
NC_012962:4942000:494418649441864944638453Photorhabdus asymbiotica, complete genometail fiber assembly protein homolog from lambdoid prophage dlp122e-0860.1
NC_008258:2045000:205388620538862054155270Shigella flexneri 5 str. 8401, complete genomehypothetical bacteriophage protein2e-0860.1
NC_004741:2009769:202189520218952022164270Shigella flexneri 2a str. 2457T, complete genomeputative bacteriophage protein2e-0860.1
NC_017328:2090679:210082021008202101089270Shigella flexneri 2002017 chromosome, complete genomeputative bacteriophage protein2e-0860.1
NC_012880:2480000:248311324831132483727615Dickeya dadantii Ech703, complete genometail assembly chaperone gp382e-0860.1
NC_013971:335247:347714347714348004291Erwinia amylovora ATCC 49946 chromosome, complete genome2e-0860.1
NC_014500:177824:190787190787191410624Dickeya dadantii 3937 chromosome, complete genomeTail fiber assembly protein2e-0859.7
NC_007712:1182518:119294511929451193556612Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-0859.3
NC_004431:1352906:137255413725541372820267Escherichia coli CFT073, complete genomeHypothetical protein ylcE5e-0858.5
NC_007712:3067000:307497130749713075399429Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein1e-0757.8
NC_013941:733286:741625741625741930306Escherichia coli O55:H7 str. CB9615 chromosome, complete genometail fiber assembly protein9e-0857.8
NC_011415:644811:655089655089655394306Escherichia coli SE11 chromosome, complete genomehypothetical protein9e-0857.8
NC_013892:992811:101244310124431012859417Xenorhabdus bovienii SS-2004 chromosome, complete genomeCPS-53 (KpLE1) prophage; tail fiber assembly1e-0757.4
NC_013353:604719:614851614851615156306Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein1e-0757.4
AP010958:604719:614851614851615156306Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein1e-0757.4
NC_013361:649518:658683658683658988306Escherichia coli O26:H11 str. 11368 chromosome, complete genome1e-0757.4
NC_007946:2894793:290688029068802907482603Escherichia coli UTI89, complete genomelambdoid prophage e14 tail fiber assembly protein-like protein2e-0757
NC_008563:2909945:292148929214892922091603Escherichia coli APEC O1, complete genomeputative tail fiber assembly protein2e-0757
NC_011742:2823000:283921728392172839819603Escherichia coli S88 chromosome, complete genometail fiber chaperone (assembly protein); e14 prophage2e-0757
NC_010102:1829357:184176318417631842170408Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0757
NC_011751:1377457:139787813978781398144267Escherichia coli UMN026 chromosome, complete genomeputative tail fiber assembly protein1e-0757
NC_007712:4023516:403166940316694032190522Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-0756.6
NC_012660:4558122:457915245791524579373222Pseudomonas fluorescens SBW25 chromosome, complete genome2e-0756.6
NC_002655:301940:305775305775306368594Escherichia coli O157:H7 EDL933, complete genomeunknown protein from prophage CP-933H4e-0755.8
NC_002695:301939:305422305422306015594Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-0755.8
NC_011353:305820:309303309303309896594Escherichia coli O157:H7 str. EC4115 chromosome, complete genometail fiber assembly protein-like protein4e-0755.8
NC_013008:306953:309303309303309896594Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-0755.8
NC_003198:4453457:448272144827214483128408Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage tail fibre protein8e-0754.7
NC_004578:4432983:444663644466364446914279Pseudomonas syringae pv. tomato str. DC3000, complete genometail fiber assembly domain protein2e-0653.1
NC_010102:1779707:180070718007071801114408Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-0651.6