Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1964514 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1964514, End: 1965428, Length: 915

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016831:1690811:170444717044471705361915Salmonella enterica subsp. enterica serovar Gallinarum/pulloruminner membrane protein (PagO)8e-174609
NC_012125:1897611:191576319157631916677915Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein8e-174609
NC_011294:1220526:125536712553671256281915Salmonella enterica subsp. enterica serovar Enteritidis strinner membrane protein PagO8e-174609
NC_011274:1299475:131955513195551320469915Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91inner membrane protein PagO8e-174609
NC_010102:1137247:115928411592841160198915Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-174609
NC_006905:1961774:197604919760491976963915Salmonella enterica subsp. enterica serovar Choleraesuis strPhoPQ-activated gene; predicted integral membrane protein8e-174609
NC_003197:1945858:195950719595071960421915Salmonella typhimurium LT2, complete genomeintegral membrane protein1e-173608
NC_011083:1993672:200733120073312008245915Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,protein PagO1e-173608
NC_016810:1903426:191707519170751917989915Salmonella enterica subsp. enterica serovar Typhimurium strinner membrane protein (PagO)1e-173608
NC_016856:1957263:197091219709121971826915Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sintegral membrane protein1e-173608
NC_016857:1903426:191707519170751917989915Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74integral membrane protein1e-173608
NC_016860:1943203:195685219568521957766915Salmonella enterica subsp. enterica serovar Typhimurium strprotein PagO1e-173608
NC_016863:1905454:191910319191031920017915Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1integral membrane protein1e-173608
NC_016832:1090274:109818510981851099099915Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,putative transporter5e-172603
NC_004631:1091303:109921410992141100128915Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein5e-172603
NC_003198:1867456:188100418810041881918915Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein5e-172603
NC_006511:1063249:108174710817471082661915Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-171601
NC_011147:1057259:107575710757571076671915Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-171601
NC_011094:1923870:193656219365621937299738Salmonella enterica subsp. enterica serovar Schwarzengrund str2e-138491
NC_009832:2211154:224124422412442242188945Serratia proteamaculans 568, complete genomeprotein of unknown function DUF6 transmembrane8e-137486
NC_012731:3411161:344387134438713444785915Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative PhoPQ-activated integral membrane protein2e-122439
NC_006625:1:123381233813240903Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequencehypothetical protein2e-118425
NC_012751:275336:292403292403293290888Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeintegral membrane protein2e-102372
NC_016632:170000:172645172645173544900Serratia symbiotica str. 'Cinara cedri' chromosome, completeputative inner membrane protein6e-78290
NC_002516:2306776:231289923128992313789891Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-46186
NC_014976:170683:170683170683171561879Bacillus subtilis BSn5 chromosome, complete genomecysteine and O-acetyl serine efflux permease1e-1584
NC_017195:2027430:203142320314232032301879Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeYoaV1e-1584
NC_016047:2150000:215285621528562153734879Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completehypothetical protein2e-1376.3
NC_014479:2038348:204106020410602041938879Bacillus subtilis subsp. spizizenii str. W23 chromosome, completecysteine and O-acetyl serine efflux permease8e-1374.7
NC_017200:4240500:424216142421614243090930Bacillus thuringiensis serovar finitimus YBT-020 chromosome,integral membrane protein2e-1066.6
NC_020244:2049753:205171920517192052534816Bacillus subtilis XF-1, complete genomecysteine and O-acetyl serine efflux permease2e-1066.6
NC_005966:159232:159232159232160149918Acinetobacter sp. ADP1, complete genomehypothetical protein4e-1065.5
NC_019962:1875952:1890179189017918911861008Natrinema pellirubrum DSM 15624, complete genomeDMT(drug/metabolite transporter) superfamily permease5e-1065.5
NC_007493:1672163:171087117108711711836966Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencepossible transporter, DME family, DMT superfamily2e-0963.2
NC_014622:1514416:151441615144161515327912Paenibacillus polymyxa SC2 chromosome, complete genomepermease, drug/metabolite transporter superfamily1e-0860.8
NC_015761:1970042:197327419732741974194921Salmonella bongori NCTC 12419, complete genomehypothetical protein4e-0859.3
NC_014483:1376500:137660913766091377520912Paenibacillus polymyxa E681 chromosome, complete genomePermease of the drug/metabolite transporter (DMT) superfamily4e-0858.9
NC_011740:1991941:199194119919411992861921Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein; putative inner membrane protein4e-0858.9
NC_009328:448224:461994461994462920927Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein4e-0858.9
NC_019962:1676632:1701488170148817024921005Natrinema pellirubrum DSM 15624, complete genomeDMT(drug/metabolite transporter) superfamily permease7e-0858.2
NC_013716:2139952:214104121410412141961921Citrobacter rodentium ICC168, complete genomehypothetical protein1e-0757.4
NC_016831:1865681:186568118656811866601921Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-0756.6
NC_010678:114000:133925133925134842918Ralstonia pickettii 12J chromosome 2, complete sequenceprotein of unknown function DUF6 transmembrane2e-0756.2
NC_012857:557911:577719577719578636918Ralstonia pickettii 12D chromosome 2, complete genomeprotein of unknown function DUF6 transmembrane2e-0756.2
NC_021182:2219286:223564422356442236543900Clostridium pasteurianum BC1, complete genomeDMT(drug/metabolite transporter) superfamily permease4e-0755.8
NC_011741:2091249:209124920912492092169921Escherichia coli IAI1 chromosome, complete genomehypothetical protein4e-0755.5
NC_011415:2248417:224750822475082248428921Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-0755.5
NC_010498:1210145:122891112289111229831921Escherichia coli SMS-3-5, complete genomecarboxylate/amino acid/amine transporter4e-0755.5
CU928160:2091249:209124920912492092169921Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein4e-0755.5
NC_012962:1364638:138096413809641381878915Photorhabdus asymbiotica, complete genomeputative integral membrane protein precursor5e-0755.5
NC_011205:1227373:124520912452091246129921Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein6e-0755.1
NC_017046:2026672:202989220298922030818927Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein7e-0754.7
NC_015663:4906652:490774749077474908658912Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative DMT superfamily transporter inner membrane protein9e-0754.7
NC_004631:948054:988990988990989910921Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein8e-0754.7
NC_016832:948029:986665986665987585921Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,putative inner membrane transporter yedA8e-0754.7
NC_011149:1110642:113139511313951132315921Salmonella enterica subsp. enterica serovar Agona str. SL483,carboxylate/amino acid/amine transporter7e-0754.7
NC_016810:2027311:203053720305372031457921Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-0754.7
NC_016856:2085283:208437420843742085294921Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein7e-0754.7
NC_016863:2029340:203256620325662033486921Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein7e-0754.7
NC_016857:2027311:203053120305312031457927Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74inner membrane transporter yedA7e-0754.7
NC_008314:1955793:196031119603111961213903Ralstonia eutropha H16 chromosome 2, complete sequenceTransmembrane protein2e-0653.5
NC_013947:1011899:1012447101244710140061560Stackebrandtia nassauensis DSM 44728 chromosome, complete genomepeptide methionine sulfoxide reductase3e-0652.8
NC_015589:2447132:246711424671142468061948Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehypothetical protein4e-0652.4
NC_017195:2027430:204812220481222049063942Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completehypothetical protein6e-0652
NC_013132:3605317:360441936044193605336918Chitinophaga pinensis DSM 2588, complete genomeprotein of unknown function DUF6 transmembrane6e-0651.6
NC_014655:1098428:111623111162311117145915Leadbetterella byssophila DSM 17132 chromosome, complete genomehypothetical protein7e-0651.6