Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1963696 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1963696, End: 1963896, Length: 201

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:1943203:195603419560341956234201Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-33139
NC_016832:1090274:109971710997171099917201Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-32137
NC_010102:1137247:116081611608161161016201Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-33139
NC_010102:1829357:183837018383701838474105Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0857.8
NC_016810:1903426:191625719162571916457201Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-33139
NC_010102:1137247:114883611488361148940105Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0857.8
NC_016856:1957263:197009419700941970294201Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein7e-33139
NC_016831:1690811:170362917036291703829201Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-32137