Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1960572 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1960572, End: 1960766, Length: 195

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016856:1957263:196696019669601967154195Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-30131
NC_012125:1897611:192106019210601921254195Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-30131
NC_011205:1391971:141197214119721412166195Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-30131
NC_011083:1993672:200336220033622003556195Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein2e-30131
NC_006905:1961774:197148819714881971682195Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein2e-30131
NC_016831:1690811:170049117004911700685195Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-30130
NC_011094:1923870:193356519335651933765201Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-28124
NC_011149:1236689:124117612411761241370195Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein2e-28124
NC_016832:1090274:110275811027581102952195Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-28123