Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1948497 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1948497, End: 1948736, Length: 240

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:1090274:110813811081381108377240Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-41167
NC_011094:1923870:192814019281401928379240Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-41167
NC_006905:1961774:196608119660811966320240Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-41167
NC_003198:1867456:187172718717271871966240Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-41167
NC_004631:1091303:110916611091661109405240Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-41167
NC_011205:1391971:141733614173361417575240Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein9e-41165
NC_011149:1236689:125026412502641250503240Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein9e-41165
NC_003197:1945858:195012919501291950368240Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein9e-41165
NC_011083:1993672:199793719979371998176240Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein9e-41165
NC_016810:1903426:190769719076971907936240Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein9e-41165
NC_016831:1690811:169507616950761695315240Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein9e-41165
NC_016856:1957263:196153419615341961773240Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein9e-41165
NC_016857:1903426:190769719076971907936240Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein9e-41165
NC_016860:1943203:194747419474741947713240Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein9e-41165
NC_016863:1905454:190972519097251909964240Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein9e-41165
NC_017046:1902788:190705919070591907298240Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein9e-41165
NC_017265:2087487:208868420886842088923240Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein2e-24111
NC_008800:2013450:203273020327302032972243Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein6e-2095.9