Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1944226 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1944226, End: 1946865, Length: 2640

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:1902788:1902788190278819054272640Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein01731
NC_016863:1905454:1905454190545419080932640Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein01731
NC_016860:1943203:1943203194320319458422640Salmonella enterica subsp. enterica serovar Typhimurium strMce family protein01731
NC_016857:1903426:1903426190342619060652640Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein01731
NC_016856:1957263:1957263195726319599022640Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein01731
NC_016810:1903426:1903426190342619060652640Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein01731
NC_003197:1945858:1945858194585819484972640Salmonella typhimurium LT2, complete genomeputative inner membrane protein01731
NC_003198:1867456:1867456186745618700952640Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein01730
NC_011094:1923870:1923870192387019265092640Salmonella enterica subsp. enterica serovar Schwarzengrund strmce-like protein01730
NC_016832:1090274:1110009111000911126422634Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein01727
NC_011083:1993672:1993672199367219963052634Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,mce-related protein01727
NC_011205:1391971:1419207141920714218402634Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853mce-related protein01724
NC_011149:1236689:1252135125213512547682634Salmonella enterica subsp. enterica serovar Agona str. SL483,mce-related protein01723
NC_006905:1961774:1961774196177419644492676Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein01722
NC_016831:1690811:1690811169081116934442634Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein01721
NC_014837:2458780:2459993245999324626322640Pantoea sp. At-9b chromosome, complete genomemammalian cell entry related domain-containing protein01295
NC_013421:2306000:2324188232418823268302643Pectobacterium wasabiae WPP163, complete genomeMammalian cell entry related domain protein01232
NC_014972:1407632:1408866140886614104971632Desulfobulbus propionicus DSM 2032 chromosome, complete genomeMammalian cell entry related domain-containing protein2e-50201
NC_011146:2304475:2304475230447523061511677Geobacter bemidjiensis Bem, complete genomeMammalian cell entry related domain protein8e-45182
NC_016616:2426893:2443404244340424449751572Dechlorosoma suillum PS chromosome, complete genomeqaraquat-inducible protein B7e-44179
NC_012918:2569681:2590909259090925925791671Geobacter sp. M21 chromosome, complete genomehypothetical protein1e-42175
NC_014500:2402881:2420371242037124220411671Dickeya dadantii 3937 chromosome, complete genomeParaquat-inducible protein B2e-41171
NC_013508:1351447:1373129137312913747721644Edwardsiella tarda EIB202, complete genomeparaquat-inducible protein B5e-41170
NC_014117:442616:5134985134985151591662Burkholderia sp. CCGE1002 chromosome chromosome 1, completeMammalian cell entry related domain protein2e-40167
NC_005966:2653945:2676704267670426783771674Acinetobacter sp. ADP1, complete genomeparaquat-inducible protein1e-39166
NC_020211:996497:1023058102305810247041647Serratia marcescens WW4, complete genomeparaquat-inducible protein B1e-38162
NC_009832:5369566:5372602537260253742451644Serratia proteamaculans 568, complete genomeMammalian cell entry related domain protein5e-38160
NC_012751:1190206:1194087119408711957451659Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeparaquat-inducible protein B9e-36152
NC_007484:3071329:3091585309158530932371653Nitrosococcus oceani ATCC 19707, complete genomeParaquat-inducible protein B3e-35150
NC_009654:3316458:3320898332089833225441647Marinomonas sp. MWYL1, complete genomehypothetical protein7e-35149
NC_015851:89006:9586995869975481680Acidithiobacillus caldus SM-1 megaplasmid, complete sequencehypothetical protein2e-31138
NC_003911:1265972:1317572131757213199862415Silicibacter pomeroyi DSS-3, complete genomeparaquat-inducible protein, putative1e-27125