Pre_GI: BLASTP Hits

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Query: NC_011080:1709612:1733506 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1733506, End: 1736142, Length: 2637

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:1429523:1467363146736314699992637Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein01698
NC_016832:1582273:1601591160159116042272637Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein01695
NC_011083:1761352:1785256178525617878922637Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein01695
NC_017046:1669995:1693889169388916965252637Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein01693
NC_016857:1670112:1694006169400616966422637Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein01693
NC_016810:1670112:1694006169400616966422637Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein01693
NC_006905:1726416:1750309175030917529452637Salmonella enterica subsp. enterica serovar Choleraesuis strputative periplasmic protein01692
NC_016831:1468691:1492588149258814952242637Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein01690
NC_011294:1465500:1489296148929614919322637Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein01689
NC_008563:1505405:1529538152953815321772640Escherichia coli APEC O1, complete genomehypothetical protein01373
NC_016514:2079975:2100491210049121031302640Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YdbH01266
NC_013508:1862896:1880166188016618827692604Edwardsiella tarda EIB202, complete genomehypothetical protein0683
NC_013892:2332319:2353463235346323560812619Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein0665
NC_018691:3496420:3500533350053335031392607Alcanivorax dieselolei B5 chromosome, complete genomehypothetical protein3e-1377.8
NC_015723:1347946:1354556135455613572162661Cupriavidus necator N-1 chromosome 2, complete sequencehypothetical protein2e-0965.9