Pre_GI: BLASTP Hits

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Query: NC_011080:1709612:1732392 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1732392, End: 1732841, Length: 450

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:1726416:174919517491951749644450Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein2e-84310
NC_011149:1429523:147066414706641471113450Salmonella enterica subsp. enterica serovar Agona str. SL483,glutathione-dependent formaldehyde-activating, GFA1e-83308
NC_004631:1587000:160352716035271603976450Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-83308
NC_011094:1683979:170677917067791707228450Salmonella enterica subsp. enterica serovar Schwarzengrund strglutathione-dependent formaldehyde-activating, GFA1e-83308
NC_003197:1713259:173603917360391736488450Salmonella typhimurium LT2, complete genomeputative inner membrane protein7e-84308
NC_016810:1670112:169289216928921693341450Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein7e-84308
NC_016856:1723236:174601617460161746465450Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein7e-84308
NC_016857:1670112:169289216928921693341450Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein7e-84308
NC_016860:1710950:173373017337301734179450Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein7e-84308
NC_016863:1671428:169420816942081694657450Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein7e-84308
NC_016831:1468691:149147414914741491923450Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-82302
NC_011083:1761352:178414217841421784591450Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,glutathione-dependent formaldehyde-activating, GFA5e-82302
NC_016832:1582273:160047716004771600797321Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Glutathione-dependent formaldehyde-activating, GFA2e-57220
NC_017046:1669995:169277516927751693095321Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-57220
NC_016514:2476359:248248124824812482855375Enterobacter cloacae EcWSU1 chromosome, complete genomeglutathione-Dependent Formaldehyde-Activating GFA1e-50198
NC_002947:737924:757377757377757832456Pseudomonas putida KT2440, complete genomehypothetical protein2e-46184
NC_017986:3407913:342706934270693427563495Pseudomonas putida ND6 chromosome, complete genomehypothetical protein2e-46184
NC_007005:98488:136494136494136931438Pseudomonas syringae pv. syringae B728a, complete genomeGlutathione-dependent formaldehyde-activating, GFA9e-45178
NC_004603:1897532:190297319029731903377405Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein2e-36150
NC_010505:2103887:212904921290492129474426Methylobacterium radiotolerans JCM 2831, complete genomeglutathione-dependent formaldehyde-activating GFA7e-36149
NC_014121:1848971:186172818617281862030303Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-35147
NC_012997:2107933:212108421210842121506423Teredinibacter turnerae T7901, complete genomehypothetical protein6e-31132
NC_015733:715947:737249737249737551303Pseudomonas putida S16 chromosome, complete genomeglutathione-dependent formaldehyde-activating protein1e-30132
NC_018691:318662:342659342659342913255Alcanivorax dieselolei B5 chromosome, complete genomeGlutathione-dependent formaldehyde-activating GFA1e-23108
NC_004463:2158116:2200533220053322017561224Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein2e-1581.6
NC_017249:7993713:8076227807622780773781152Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-1581.3
NC_008391:2045348:206532520653252065699375Burkholderia cepacia AMMD chromosome 2, complete sequenceglutathione-dependent formaldehyde-activating, GFA1e-1478.6
NC_008702:2892605:289668628966862897087402Azoarcus sp. BH72, complete genomeconserved hypothetical protein3e-1270.9
NC_017249:18493:358223582236217396Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein5e-1063.5
NC_009256:3056000:307414630741463074493348Burkholderia vietnamiensis G4 chromosome 1, complete sequenceglutathione-dependent formaldehyde-activating protein9e-1062.4
NC_007645:6647500:667228666722866672633348Hahella chejuensis KCTC 2396, complete genomehypothetical protein1e-0858.5
NC_012691:779826:780984780984781409426Tolumonas auensis DSM 9187, complete genomeglutathione-dependent formaldehyde-activating GFA3e-0857.4
NC_016613:2139276:215197021519702152350381Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein3e-0857.4
NC_010410:480518:492979492979493329351Acinetobacter baumannii AYE, complete genomehypothetical protein1e-0755.1
NC_010804:2808676:282898128289812829328348Burkholderia multivorans ATCC 17616 chromosome 1, completeprobable glutathione-dependent formaldehyde-activating protein1e-0755.1
NC_004463:18497:358273582736150324Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein5e-0753.1
NC_013440:1879306:189825518982551898680426Haliangium ochraceum DSM 14365, complete genomehypothetical protein4e-0650.1