Pre_GI: BLASTP Hits

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Query: NC_011080:1709612:1725195 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1725195, End: 1725905, Length: 711

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011149:1429523:147760014776001478310711Salmonella enterica subsp. enterica serovar Agona str. SL483,methyltransferase type 124e-139493
NC_006905:1726416:174204617420461742708663Salmonella enterica subsp. enterica serovar Choleraesuis strputative SAM-dependent methyltransferase5e-129459
NC_011205:1633353:163905516390551639717663Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853methyltransferase type 125e-129459
NC_011294:1493849:149953314995331500195663Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein5e-129459
NC_012125:2143246:214893021489302149592663Salmonella enterica subsp. enterica serovar Paratyphi C strainSAM-dependent methyltransferase5e-129459
NC_016832:1582273:159332815933281593990663Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-129459
NC_011094:1683979:169963016996301700292663Salmonella enterica subsp. enterica serovar Schwarzengrund strtype 12 methyltransferase3e-128457
NC_011274:1544653:155033715503371550999663Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein8e-128456
NC_016831:1468691:148432514843251484987663Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein8e-128456
NC_016810:1670112:168574316857431686405663Salmonella enterica subsp. enterica serovar Typhimurium strmethyltransferase6e-128456
NC_016856:1723236:173886717388671739529663Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative SAM-dependent methyltransferase6e-128456
NC_016860:1710950:172658117265811727243663Salmonella enterica subsp. enterica serovar Typhimurium strmethyltransferase6e-128456
NC_017046:1669995:168562616856261686288663Salmonella enterica subsp. enterica serovar Typhimurium str. 798methyltransferase6e-128456
NC_011083:1761352:177699217769921777654663Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,methyltransferase type 123e-127454
NC_010067:1300606:130630413063041306966663Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-123442
NC_015761:1599000:161191316119131612575663Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-118424
NC_010102:1388344:139401313940131394531519Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-97355
NC_016857:1670112:168588716858871686405519Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74type 12 methyltransferase2e-96352
NC_003198:1378457:138414113841411384578438Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-81300
NC_004631:1587000:159660315966031597040438Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein4e-81300
NC_016863:1671428:168728416872841687721438Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative SAM-dependent methyltransferase6e-80296
NC_003197:1713259:172911517291151729552438Salmonella typhimurium LT2, complete genomeputative SAM-dependent methyltransferase6e-80296
NC_015224:2701914:271929227192922719948657Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,SAM-dependent methyltransferase9e-75280
NC_013941:733286:740900740900741568669Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-73274
NC_004431:1352906:137182913718291372494666Escherichia coli CFT073, complete genomeHypothetical protein ybcY precursor7e-73273
NC_013353:604719:614126614126614794669Escherichia coli O103:H2 str. 12009, complete genomemethylase1e-72273
NC_011415:644811:654364654364655032669Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-72273
AP010958:604719:614126614126614794669Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative methylase1e-72273
NC_008258:2045000:205422420542242054880657Shigella flexneri 5 str. 8401, complete genomeunknown protein encoded within prophage2e-72272
NC_013361:649518:657958657958658614657Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-72272
NC_004337:2035945:204554920455492046217669Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-72272
NC_017328:2090679:210114621011462101814669Shigella flexneri 2002017 chromosome, complete genomehypothetical protein1e-72272
NC_010465:2428620:243926024392602439919660Yersinia pseudotuberculosis YPIII, complete genomeMethyltransferase type 126e-71267
NC_008149:1669921:167579216757921676451660Yersinia pestis Nepal516, complete genomehypothetical protein6e-71267
NC_004088:2541033:255168525516852552344660Yersinia pestis KIM, complete genomehypothetical protein6e-71267
NC_008150:1543635:154950615495061550165660Yersinia pestis Antiqua, complete genomehypothetical protein6e-71267
NC_005810:2043730:204960220496022050261660Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein6e-71267
NC_010634:2252329:225820022582002258859660Yersinia pseudotuberculosis PB1/+, complete genomemethyltransferase type 126e-71267
NC_003143:2258636:226450722645072265166660Yersinia pestis CO92, complete genomehypothetical protein6e-71267
NC_006155:2334122:233999323399932340652660Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein6e-71267
NC_009381:1258396:126827912682791268938660Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein6e-71267
NC_009708:2392640:240329324032932403952660Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein6e-71267
NC_014029:2335021:234567323456732346332660Yersinia pestis Z176003 chromosome, complete genomehypothetical protein6e-71267
NC_017154:2258228:226409822640982264757660Yersinia pestis D106004 chromosome, complete genomehypothetical protein6e-71267
NC_017265:2263347:227264322726432273302660Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein6e-71267
NC_006625:1:9505950510158654Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceunknown protein encoded within prophage2e-68258
NC_012731:3411161:344695834469583447611654Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein2e-68258
NC_006625:1:3643641071708Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceunknown protein encoded within prophage3e-64244
NC_011742:585908:604835604835605419585Escherichia coli S88 chromosome, complete genomeAdoMet-dependent methyltransferase; DLP12 prophage3e-62238
NC_011751:1377457:139715313971531397737585Escherichia coli UMN026 chromosome, complete genomeputative AdoMet-dependent methyltransferase; DLP12 prophage4e-62237
AC_000091:558920:581375581375581959585Escherichia coli W3110 DNA, complete genomepredicted SAM-dependent methyltransferase7e-62236
NC_000913:558920:581375581375581959585Escherichia coli K12, complete genomeDLP12 prophage; predicted SAM-dependent methyltransferase7e-62236
NC_020418:1397112:140828514082851408944660Morganella morganii subsp. morganii KT, complete genomePutative SAM-dependent methyltransferase1e-61236
NC_007613:1038000:104627910462791046710432Shigella boydii Sb227, complete genomehypothetical protein9e-43173
NC_011894:2385834:239177123917712392445675Methylobacterium nodulans ORS 2060, complete genomeMethyltransferase type 126e-40164
NC_011894:5056901:506743450674345068108675Methylobacterium nodulans ORS 2060, complete genomeMethyltransferase type 122e-39162
NC_013440:1480855:149997414999741500627654Haliangium ochraceum DSM 14365, complete genomeMethyltransferase type 123e-26118
NC_018524:4564493:456923345692334569955723Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehypothetical protein2e-1892.4