Pre_GI: BLASTP Hits

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Query: NC_011080:1709612:1723229 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1723229, End: 1724779, Length: 1551

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:1669995:1683612168361216851621551Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein01011
NC_003197:1713259:1726876172687617284261551Salmonella typhimurium LT2, complete genomeputative inner membrane protein01011
NC_016810:1670112:1683729168372916852791551Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein01011
NC_016856:1723236:1736853173685317384031551Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein01011
NC_016857:1670112:1683729168372916852791551Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein01011
NC_016860:1710950:1724567172456717261171551Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein01011
NC_016863:1671428:1685045168504516865951551Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein01011
NC_011083:1761352:1774978177497817765281551Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative inner membrane protein01009
NC_010102:1388344:1395139139513913966891551Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein01008
NC_011274:1544653:1551463155146315530131551Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein01003
NC_003198:1378457:1385267138526713868171551Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein01002
NC_004631:1587000:1594364159436415959141551Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein01002
NC_016832:1582273:1591314159131415928641551Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein01002
NC_016831:1468691:1482310148231014838601551Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein0999
NC_011205:1633353:1640181164018116417311551Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853inner membrane protein0999
NC_011149:1429523:1478726147872614802761551Salmonella enterica subsp. enterica serovar Agona str. SL483,putative inner membrane protein0999
NC_011094:1683979:1697616169761616991661551Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein0995
NC_006905:1726416:174003417400341740534501Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein4e-75282
NC_009051:1455183:1457560145756014591011542Methanoculleus marisnigri JR1, complete genomeglycosyl transferase, family 392e-0758.2
NC_015957:8103472:8123514812351481249951482Streptomyces violaceusniger Tu 4113 chromosome, complete genomeintegral membrane protein4e-0757
NC_011027:1971580:1989154198915419907551602Chlorobaculum parvum NCIB 8327, complete genomemembrane protein-like protein1e-0655.1