Pre_GI: BLASTP Hits

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Query: NC_011080:1709612:1718993 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1718993, End: 1719337, Length: 345

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1671428:168080916808091681153345Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein3e-52203
NC_010102:1388344:140058114005811400925345Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-52203
NC_011083:1761352:177074217707421771086345Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,cyanate transport3e-52203
NC_003197:1713259:172264017226401722984345Salmonella typhimurium LT2, complete genomeputative inner membrane protein3e-52203
NC_006905:1726416:173579917357991736143345Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein3e-52203
NC_011274:1544653:155690715569071557251345Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein3e-52203
NC_011294:1493849:150610115061011506445345Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-52203
NC_012125:2143246:215549721554972155841345Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-52203
NC_016860:1710950:172033117203311720675345Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-52203
NC_016857:1670112:167949316794931679837345Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein3e-52203
NC_016856:1723236:173261717326171732961345Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein3e-52203
NC_016831:1468691:147807214780721478416345Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein3e-52203
NC_016810:1670112:167949316794931679837345Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-52203
NC_011205:1633353:164562316456231645967345Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853cyanate transport6e-51199
NC_011094:1683979:169336116933611693705345Salmonella enterica subsp. enterica serovar Schwarzengrund strcyanate transport4e-50196
NC_011149:1429523:148417114841711484515345Salmonella enterica subsp. enterica serovar Agona str. SL483,cyanate transport6e-50195
NC_003198:1378457:139072013907201391064345Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-49194
NC_004631:1587000:159011715901171590461345Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-49194
NC_015761:1599000:160651516065151606871357Salmonella bongori NCTC 12419, complete genomehypothetical protein7e-41165
NC_016514:2476359:248382424838242484309486Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein1e-40164
NC_014618:4114004:411851541185154118850336Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein6e-38155
NC_017046:1669995:167937616793761679642267Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-36150
NC_016832:1582273:158706715870671587333267Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-35147
NC_015663:2090442:211662721166272116971345Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein7e-34142
NC_014121:1848971:186048418604841860816333Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative inner membrane protein6e-33139
NC_020063:1051310:105792710579271058268342Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein7e-26115
NC_012108:3824977:383872138387213839374654Desulfobacterium autotrophicum HRM2, complete genomeputative cold-shock protein2e-1168.2
NC_006138:2341975:234197523419752342589615Desulfotalea psychrophila LSv54, complete genomehypothetical protein2e-1167.4
NC_012997:4152938:417130041713004171755456Teredinibacter turnerae T7901, complete genomecold-shock DNA-binding domain protein8e-1165.9
NC_018691:318662:333336333336333716381Alcanivorax dieselolei B5 chromosome, complete genomeCold-shock DNA-binding domain protein2e-1064.3
NC_012691:779826:779826779826780101276Tolumonas auensis DSM 9187, complete genomeprotein of unknown function DUF12946e-1062.8
NC_015856:1733500:175381917538191754436618Collimonas fungivorans Ter331 chromosome, complete genomecold-shock DNA-binding domain-containing protein1e-0961.6
NC_009654:1729159:174035317403531740628276Marinomonas sp. MWYL1, complete genomehypothetical protein2e-0961.2
NC_012778:1946924:196326519632651963534270Eubacterium eligens ATCC 27750, complete genomehypothetical protein2e-0857.4