Pre_GI: BLASTP Hits

Some Help

Query: NC_011080:1709612:1716504 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1716504, End: 1717220, Length: 717

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:1669995:167688716768871677603717Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-118424
NC_011294:1493849:150821815082181508934717Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-118424
NC_003197:1713259:172015117201511720867717Salmonella typhimurium LT2, complete genomeputative inner membrane protein2e-118424
NC_011083:1761352:176825317682531768969717Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative inner membrane protein2e-118424
NC_010102:1388344:140269814026981403414717Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-118424
NC_016810:1670112:167700416770041677720717Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-118424
NC_016856:1723236:173012817301281730844717Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein2e-118424
NC_016857:1670112:167700416770041677720717Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein2e-118424
NC_016860:1710950:171784217178421718558717Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein2e-118424
NC_016863:1671428:167832016783201679036717Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein2e-118424
NC_011274:1544653:155902415590241559740717Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein6e-118423
NC_011149:1429523:148628214862821486998717Salmonella enterica subsp. enterica serovar Agona str. SL483,putative inner membrane protein1e-116419
NC_011094:1683979:169087216908721691588717Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-116419
NC_010067:1300606:130942213094221310138717Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-110396
NC_015761:1599000:160700316070031607719717Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-106385
NC_002655:3538656:355408935540893554847759Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by prophage CP-933Y2e-53209
NC_013941:975353:997213997213997971759Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-53209
NC_002695:3468873:348676634867663487482717Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-53209
NC_011353:3573641:359091235909123591628717Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-53209
NC_011601:1039500:105925910592591059975717Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomemembrane protein2e-53209
NC_013008:3525428:354575135457513546467717Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-53209
NC_013361:3112023:311952131195213120237717Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-53209
NC_006905:1726416:173360717336071733969363Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein3e-42172
NC_013364:2898964:290967229096722910244573Escherichia coli O111:H- str. 11128, complete genomehypothetical protein3e-33141
NC_011205:1633353:164821616482161648455240Salmonella enterica subsp. enterica serovar Dublin str. CT_020218533e-32138
NC_016831:1468691:147558314755831475822240Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein3e-32138
NC_016513:1958500:196029819602981961038741Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completehypothetical protein3e-1995.1
NC_013416:1621469:162418216241821624922741Aggregatibacter actinomycetemcomitans D11S-1, complete genomehypothetical protein3e-1995.1
NC_012913:626449:626449626449627246798Aggregatibacter aphrophilus NJ8700, complete genomehypothetical protein1e-1893.6
NC_007946:1119000:111982611198261120260435Escherichia coli UTI89, complete genomehypothetical protein2e-1272.8
NC_013364:2898964:290947529094752909633159Escherichia coli O111:H- str. 11128, complete genome4e-0651.6