Pre_GI: BLASTP Hits

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Query: NC_011080:1709612:1709612 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1709612, End: 1710955, Length: 1344

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011094:1683979:1683979168397916853221344Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein0922
NC_011205:1633353:1654004165400416553471344Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein0920
NC_006905:1726416:1726416172641617277591344Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein0919
NC_017046:1669995:1669995166999516713891395Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein0919
NC_011294:1493849:1514483151448315158261344Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein0919
NC_016831:1468691:1468691146869114700341344Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein0919
NC_003197:1713259:1713259171325917146021344Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein0919
NC_016810:1670112:1670112167011216714551344Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein0919
NC_016857:1670112:1670112167011216714551344Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein0919
NC_016860:1710950:1710950171095017122931344Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein0919
NC_016863:1671428:1671428167142816727711344Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein0919
NC_010102:1388344:1408963140896314103061344Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0918
NC_016856:1723236:1723236172323617245791344Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein0918
NC_012125:2143246:2163827216382721652211395Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein0918
NC_011274:1544653:1565289156528915666321344Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein0917
NC_011083:1761352:1761352176135217626951344Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein0917
NC_011149:1429523:1492541149254114938841344Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein0917
NC_010067:1300606:1316977131697713183711395Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0877
NC_004631:1587000:1588755158875515898551101Salmonella enterica subsp. enterica serovar Typhi Ty2, complete0756
NC_003198:1378457:1391326139132613924261101Salmonella enterica subsp. enterica serovar Typhi str. CT18,0756
NC_016832:1582273:1585705158570515867331029Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein0704