Pre_GI: BLASTP Hits

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Query: NC_011080:1209935:1233934 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1233934, End: 1234260, Length: 327

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:1205282:122973412297341230159426Salmonella enterica subsp. enterica serovar Typhimurium strputative autoagglutination protein3e-56216
NC_017046:1164176:118836011883601188686327Salmonella enterica subsp. enterica serovar Typhimurium str. 798curli prooduction protein1e-55214
NC_016863:1165232:118960011896001189926327Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative autoagglutination protein1e-55214
NC_003197:1207597:123214712321471232473327Salmonella typhimurium LT2, complete genomeputative curli production protein precursor1e-55214
NC_003198:1117687:114242311424231142749327Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein7e-55212
NC_006905:1186895:121224412122441212558315Salmonella enterica subsp. enterica serovar Choleraesuis strputative curli production protein2e-52204
NC_013716:1178383:120234012023401202672333Citrobacter rodentium ICC168, complete genomeputative curli production protein csgc precursor6e-42169
AC_000091:1083798:110520211052021105534333Escherichia coli W3110 DNA, complete genomepredicted curli production protein1e-36151
NC_000913:1087062:110418411041841104516333Escherichia coli K12, complete genomepredicted curli production protein1e-36151
NC_004337:1065609:108226610822661082598333Shigella flexneri 2a str. 301, complete genomeputative curli production protein6e-36149
NC_016514:1701273:171006117100611710393333Enterobacter cloacae EcWSU1 chromosome, complete genomeCurli assembly protein CsgC1e-34145
NC_014121:2629075:263984226398422640174333Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completecurli production protein2e-33140
NC_015968:1709680:172024317202431720575333Enterobacter asburiae LF7a chromosome, complete genomeCurli production protein CsgC3e-30130